Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1019 ATGGTTGTATCAAAAAGCTTAGGGGATTCTTCTCCTCCATATACTACAACTGCTTGTGCTGAAAAGAATAAGAATCTAGTTGGAAACAAAAGGAAGAGAAACAATAACAAAGCCATCCATTTAAGAGCAAAAAGAGGCCAAGCAACTGATAGTCACAGTTTATCAGAAAGGGTGAGAAGAGAGAAAACCAATGAGAAACTGAGACATTTGCAGGACTTGGTTCCAGGGTGCTATAAGGCAATGGGAATGGCAGTTATGTTAGATGTGATAATAGAATATGTTCATTCACTACAGCACCAAATTCAGTTTCTATCCATGAAGCTTTCTGCAGCAAGCATATCTATTGATTTCAACACTTCTGATATGGGTGTCACAAAAACCATGCAGCAGAGAAGTGCTAGTACACATGAAATCCAAGAGATGGAAACAATAGGAGGAAAAGTTTATGGTGGGTTATGCTATTTCAACCCAACATGGCCACTTTATTGA 489 0.3845 MVVSKSLGDSSPPYTTTACAEKNKNLVGNKRKRNNNKAIHLRAKRGQATDSHSLSERVRREKTNEKLRHLQDLVPGCYKAMGMAVMLDVIIEYVHSLQHQIQFLSMKLSAASISIDFNTSDMGVTKTMQQRSASTHEIQEMETIGGKVYGGLCYFNPTWPLY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1019 162 Gene3D - 43 116 IPR036638 GO:0046983
Lal18g1019 162 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 144 IPR024097 GO:0006355
Lal18g1019 162 PANTHER TRANSCRIPTION FACTOR BHLH75 20 144 - -
Lal18g1019 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 114 IPR036638 GO:0046983
Lal18g1019 162 Pfam Helix-loop-helix DNA-binding domain 51 95 IPR011598 GO:0046983
Lal18g1019 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Lal18g1019 162 MobiDBLite consensus disorder prediction 43 60 - -
Lal18g1019 162 MobiDBLite consensus disorder prediction 33 60 - -
Lal18g1019 162 SMART finulus 53 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1019 Lal-Chr18 13195530 13197763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1019 39 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 68.868 7.87e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g1019 HLH 0.00011 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1019 18 13195530 13197763 Lal18g1019 18 13195530 13197763 ECH
Lal18g1019 18 13195530 13197763 Lal16g1011 16 6723723 6725452 ECH
Lal18g1019 18 13195530 13197763 Lal8g0432 8 2908368 2910411 ECH
Lal18g1019 18 13195530 13197763 Lal10g0976 10 17037992 17039843 ECH
Lal18g1019 18 13195530 13197763 Lal6g1644 6 19205330 19207783 ECH