Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1010 ATGCCGGAAATCCGGAACCAACAACCTAAAGAGAGGAAAACTGTATTTAAGAAACGGAAGCATAGTGCAAACTCATTTGAAGGCACCAAAATGCAGAGAAAATTGCGCATAATTTGGCATGATCCTGATGCTACTGACTCTTCTTCAGATGAAGAAGGGTATCAAGAAATGGGTAGAAAGAATAAGAGAACTGTGCTTGAGGTCGCTCTTCCGCCTTTTCCTCCTAACTCAGTCACTGCTGATACTAGCACTGAGAGCTTTAGCAATATTGAATTGAACAAGAAAATGGTTTTAGCGAAAACCCCACCCGTGAAGAGGAAAACTGCTGGCAAATACCGAGGCGTTCGGATGAGGAAATGGGGCAAATGGGCTGCTGAAATTCGCGATCCTTTCAAAGGTACGCGACTCTGGTTGGGAACTTACAACACTGCAGAGGATGCTTCCCAAGCTTATGAGAAGAAAAAGCTTGAATTTGAGGCTATGACTAAGGCTATGTCTGGTGAAAAGAGCAACAATAACATTGCCAATGTTGTTGTTGGTGTTTCTGCTGAAGCTATGGCTGCTAAAGAGAAGATCAGCACTAACTACAGTGTTTCTTCTGGCACAGCTTCTGCGTCCGAATCAAAGTCTGCTGTTACTTTGGATGACTCGGAGTGTATGTTATCTCATGCATCGCCCTCGTCCGTGCTAGAATTGGATACCTCAACATCCAAGGCTTCCAATTTGGTGGAGAATGGTAAGATCTCGAACAATGAAGCTGTTGAGAAAAATGGTTTAGAGGCTGAGTTTACGGAGTTGATCTGTAAAGTTGATGAAGCTGGTGAAATGACTGATTTGGAGGCTGAATTGGCAGACCTGGAAATGCCGGATTTGAGTATTTTGAATGCGCCGCAACCATCTACTGATGCGGATGCTGCATTTGCATTTGAGTTCGATTGGTTAACATTCGATGGTTTTGATGATGATCTTGGTGGCCTGGAGAACATTCACATCGGTGGAATTGACGAAGATGGGCCTAGTGCACTTCCTGATTTCGATTTCGGCGACTTTAGTGCTGATGAGTTTGCTGATTGGATTGAAGAACCCCTCAATATACCTTGCATATAA 1107 0.4381 MPEIRNQQPKERKTVFKKRKHSANSFEGTKMQRKLRIIWHDPDATDSSSDEEGYQEMGRKNKRTVLEVALPPFPPNSVTADTSTESFSNIELNKKMVLAKTPPVKRKTAGKYRGVRMRKWGKWAAEIRDPFKGTRLWLGTYNTAEDASQAYEKKKLEFEAMTKAMSGEKSNNNIANVVVGVSAEAMAAKEKISTNYSVSSGTASASESKSAVTLDDSECMLSHASPSSVLELDTSTSKASNLVENGKISNNEAVEKNGLEAEFTELICKVDEAGEMTDLEAELADLEMPDLSILNAPQPSTDADAAFAFEFDWLTFDGFDDDLGGLENIHIGGIDEDGPSALPDFDFGDFSADEFADWIEEPLNIPCI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1010 368 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Lal18g1010 368 SMART rav1_2 111 181 IPR001471 GO:0003700|GO:0006355
Lal18g1010 368 MobiDBLite consensus disorder prediction 20 58 - -
Lal18g1010 368 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
Lal18g1010 368 MobiDBLite consensus disorder prediction 1 58 - -
Lal18g1010 368 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Lal18g1010 368 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Lal18g1010 368 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Lal18g1010 368 SUPERFAMILY DNA-binding domain 111 158 IPR016177 GO:0003677
Lal18g1010 368 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 367 - -
Lal18g1010 368 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 13 367 - -
Lal18g1010 368 CDD AP2 111 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1010 Lal-Chr18 13108463 13110862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1010 18 367 AP2-EREBP Transcription Factor Family AT1G68550 33.426 1.64e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal18g1010 AP2 9.6e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1010 18 13108463 13110862 Lal18g1010 18 13108463 13110862 ECH