Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0996 ATGGATGAAGGTAGTTGCAATGATGAAAGCACCACAACTAATGCATTTTCTATAACCCCATCTCCAATAACAACCCTATTACCATTCACCACAACATCAAAGAATATGTCACTACCACCATCCAATAGTCTTTGTCGTATTGGCAGTGGTGCCAGTACAATAGTTGACTCGGATGGTGGTAGTAGTACAGAAGTTGAGTCTCGAAAACTCCCCTCTTCCAAGTATAAAGGTGTGGTCCCCCAACCAAATGGACGTTGGGGCGCTCAGATTTATGAGAAGCACCAACGTGTTTGGCTGGGCACCTTTATCACGGAAGAGGAAGCTGCGAAGGTGTACGACACTGCGGCTCATCGCTTCCGTGGCAAGGACGCCATAACAAACTTCAAAGCCCTCGGCGGCGGCAACGACGACATAGAGGCTGAGTTCCTCAACTCGCATTCGAAATCCGAGATCGTCGACATGCTGAGGAAGCACACGTACAATGGCGAGCTGGACCAGAGCAAGCAAAACCGGGGCAGCGTCATCGATAGGCGTCTCAGCCGCGGCACCGCTGCGAACACGGGTGGCGCGTGTGGAAACACGGCGCGTGAGTACCTGTTCGAAAAAACGGTTACTCCGAGCGACGTAGGGAAGCTGAACCGGTTAGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTACAAAACGGCGTTAACGGAATCGGTGCGGGGAAAGGGGTTCTACTGAACTTTGAAGACGTTGGAGGGAAAGTGTGGCGTTTCCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTTCTAACTAAAGGGTGGAGCCGGTTCGTTAAGGAGAAAAATCTGAAAGCCGGTGATTCGGTTTGTTTCTATAAGTCGGCCGAACCGGATAATAAGATGTTTATTGACTGGAAAATAAGGAATGATAATGAGGTTGGGTTGGTTGAACCGGGTTTTGAACCGGTTCAGGTGGTTCGGCTTTTTGGGGTAAACATATTAAAACTACCTGGGTCTGATGCTAATGGTAATAATAGTATTGGTGGATGCTACAATGGGAAGAGGAGAGAGATGGAAATGTTAACATTAGAGTGTACCAAGAAGCCTAAGATAGATTTGTAA 1116 0.4794 MDEGSCNDESTTTNAFSITPSPITTLLPFTTTSKNMSLPPSNSLCRIGSGASTIVDSDGGSSTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFITEEEAAKVYDTAAHRFRGKDAITNFKALGGGNDDIEAEFLNSHSKSEIVDMLRKHTYNGELDQSKQNRGSVIDRRLSRGTAANTGGACGNTAREYLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQNGVNGIGAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDSVCFYKSAEPDNKMFIDWKIRNDNEVGLVEPGFEPVQVVRLFGVNILKLPGSDANGNNSIGGCYNGKRREMEMLTLECTKKPKIDL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0996 371 SUPERFAMILY DNA-binding domain 73 129 IPR016177 GO:0003677
Lal18g0996 371 Gene3D - 190 316 IPR015300 -
Lal18g0996 371 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 31 369 - -
Lal18g0996 371 SMART rav1_2 74 135 IPR001471 GO:0003700|GO:0006355
Lal18g0996 371 MobiDBLite consensus disorder prediction 55 76 - -
Lal18g0996 371 ProSiteProfiles B3 DNA-binding domain profile. 200 307 IPR003340 GO:0003677
Lal18g0996 371 SUPERFAMILY DNA-binding pseudobarrel domain 198 304 IPR015300 -
Lal18g0996 371 Gene3D AP2/ERF domain 73 130 IPR036955 GO:0003700|GO:0006355
Lal18g0996 371 CDD B3_DNA 199 292 IPR003340 GO:0003677
Lal18g0996 371 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Lal18g0996 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 369 IPR044800 GO:0003700
Lal18g0996 371 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Lal18g0996 371 Pfam B3 DNA binding domain 200 302 IPR003340 GO:0003677
Lal18g0996 371 SMART B3_2 200 307 IPR003340 GO:0003677
Lal18g0996 371 ProSiteProfiles AP2/ERF domain profile. 74 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0996 Lal-Chr18 12964451 12965566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0996 1 369 B3 DNA Binding Superfamily AT1G25560 58.201 1.84e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lal18g0996 B3 1.4e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0996 18 12964451 12965566 Lal18g0996 18 12964451 12965566 ECH