Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0990 ATGTCTAGACCATCATGGTTGGTGGATAAAAGTAGAATTGCAACAAAAATAAAGAGTGCTTCAGGTGCATGTGATCCTGAGAAAGTTGTATTCAAAAGCAATCCTACCAAGGCTTGTCCAAATTGTCAACATGCTATTGACAACAGTGATGTAGCGCAAGAGTGGCCTGGCTTACCGAAAGGGGTTAAATTTGATCCATCTGATCAGGAGATCATTTGGCACTTGATTGCGAAAGTAAGTGAAGGGAATTCAAAACCTCATCCTTTCATTGATGAATTTATTACTACTATTGAAGGGGCTGATGGAATCTGTTATACTCATCCGAAAAATTTACCCGGTGTTAAGCAAGATGGAAGTATTTCCCACTTCTTCCACCGAGCAATCAAGGCTTATAACACTGGGAGTCGAAAGCGTAGAAAAATACAAGGTTGTGATTCTGGTGATCTCCGCTGGCACAAGACTGGAAAAACTAAACAAGTCAAATTGAATGGGGTTACGAAAGGATATAAAAAGATTATGGTTCTGTATGCGAGCAAAACAGATAAAACTAATTGGGTTACGCATCAGTACCACCTAGGAACGGAGCAGGATGAAAAGGATGGGGAGTATGTTATCTCTAAAGTGTTTTACCAGCAAGACAAATCGGGTGATAAAGATGATGAGGATATTTCTGAATCAACAATTTTGAGTGTGGACCCAATCACTCCCAAATCTGTGACTCCTGTCCCTCCCTGTAATGAAAGACCATGTTCAGATATAGACCTAGTCACTCCGAAATCTGCGGTTCCCGACCCTCCCCGTAATGAAAGGTCTAGCTCAGATGTAGACCTAGGACAAGAAACACATCTCATGCCTCAGATGGAGTGTTTGGATGAAATTATAGCTGATTGTGAAGGTTTTGAAAAAACTGATGTCTCCATCGTGGAAACTGAAGATAACAAAGGGATGGATAATAATGAAAGTAATGCTGACGATGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGAATTCACAACAACTTGTCGAAGCATTGTCCATGTGTGATGATCTCCTTCAAAGCCAGTCTCCCACTAGGGATGGGAAAAACGGAGAACATAGGGACCAAACTGGTCTATCTATTTATGCTCATCTAGGACCAGAGTGTCTGAAGAAGGACATTGAAGAGTGCCAAACTCTTGCCCTTGACATTGCAAATACCGATGACACACCTTCAGAATTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATCGCCTGGGGTGGCAGCAAGGCAATATAA 1296 0.419 MSRPSWLVDKSRIATKIKSASGACDPEKVVFKSNPTKACPNCQHAIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLIAKVSEGNSKPHPFIDEFITTIEGADGICYTHPKNLPGVKQDGSISHFFHRAIKAYNTGSRKRRKIQGCDSGDLRWHKTGKTKQVKLNGVTKGYKKIMVLYASKTDKTNWVTHQYHLGTEQDEKDGEYVISKVFYQQDKSGDKDDEDISESTILSVDPITPKSVTPVPPCNERPCSDIDLVTPKSAVPDPPRNERSSSDVDLGQETHLMPQMECLDEIIADCEGFEKTDVSIVETEDNKGMDNNESNADDGQKWWDSESQNLLNSQQLVEALSMCDDLLQSQSPTRDGKNGEHRDQTGLSIYAHLGPECLKKDIEECQTLALDIANTDDTPSEFRLSQLEFGSQDSFIAWGGSKAI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0990 431 ProSiteProfiles NAC domain profile. 58 211 IPR003441 GO:0003677|GO:0006355
Lal18g0990 431 Gene3D NAC domain 67 216 IPR036093 GO:0003677|GO:0006355
Lal18g0990 431 MobiDBLite consensus disorder prediction 214 275 - -
Lal18g0990 431 Pfam No apical meristem (NAM) protein 59 192 IPR003441 GO:0003677|GO:0006355
Lal18g0990 431 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 426 - -
Lal18g0990 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 426 IPR044799 GO:0003700
Lal18g0990 431 SUPERFAMILY NAC domain 43 211 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0990 Lal-Chr18 12886253 12894863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0990 5 211 NAC Transcription Factor Family AT4G28500 52.055 2.37e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal18g0990 NAM 2.8e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0990 18 12886253 12894863 Lal18g0990 18 12886253 12894863 ECH