Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0913 ATGGATTCATTTAGATCAATTAATCATCAATCAATGGAGGAGAGAAAGTTTGTGTGCAAGTATTGTAGCAAGAGGTTCCCTTGTGGAAAATCACTGGGTGGCCACATCAGGACTCATATGAATGAACATTCAGTTCAAGCCAAAGAAGAGAGAAGCAATGCTGCTATGCTCAAGTTTGATGCTATGAGAAAGAAGAGAGATTCATTAGGTTATGGTGATGGTTCTGGTGCTGGGAACCCCACATATGGGTTGAGAGAGAACCCCAAGAAAACAATGAAGTTTGTGCATTCCAATGCCACTAATAATGTACAGCAGCAATTTGACAAGTTCTGCAAAGAATGTGGGAAAGGTTTCTCATCATTGAAGGCTCTTTGTGGTCACATGGCTTGTCACTCAGAGAAAGAGAAAAGGAAATTGGTTCTTGATAATCAATCTGATATTGAGACTAATTCTGCTGCAAGGAAATCCAAGAGAATGAGGTTCAAGAACGTTAGCAGCAGTAGCAGCAACAACAATCACCTTTTTTCTTCTTTGGCTAATGGGTCTTCTTCTATGTCAGAGGTTGAGCAAGAACAAGAAGAGGTTGCTAAGTGTTTGATAATGTTGTCCAAAGACTCTACCTACAACCATAGTAGTCGTTTTGCTTTTTTTGCTGAGCCTTCTGATAACAACTCTGTTGTTCTAGAGACAAAATCACCTTCTCTTGATACAAAGTTCACTGCAAAAAATGTTCAGAATTCTGCGTCTAATGCTTATCGATACGAGGAGAAGAAGCTGCAGCTGCATAGCATGAAGTCTAAGTCTGCTGAAATCGGTTACCAGTCTCATAATTCAGACTCTGGTTATGTTAGATATGGTCCCAAGAAGGTAGACTCAGCTGATTCAAATGATGGGTTTTTCAGGAGTGAAGTGAAGTCTTCTAAAGTGGGAGACATGTCTTGGTTTGATGACTATGATGTTGAATTAGGCAAATTAGTGTCGGGGGATTTCGAAGATAGCAAAGAAGATGGAGCTACAAGGAGGTTTGCTTCAAAGAGGAGACTTATCTATGATTCTCTTGGTTCAAAGAAGATTGCAATTGGTTGTAACAATGATGAAAAGTATAAGAGTGAAGGGTGGAAGTATGAGTCATTGAACACTGAAGGGGAAAATGGCTATGATGATGATTCAACATACGAGAGTGACGAAAACAGCACGGATAGTGATTCTTATCCTGCTGCAAAGCCTAACAACAGCAAGGTCCTCAATGGGAAGAAGTCCAGCAAGGGGAAGAAACTAAAGTCAAAGAAAAGCAAGGAACATGAGTGTCCAATCTGCAACAGGATTTTCAGGTCAGGCCAAGCCTTGGGAGGTCACAAAAGGTCCCATTTTCTCGTAGGTTCCGAAAAAAACACTCTTGTGATTAGGCCAGCTGGTCCTCCTCCAGCTCCTTGCCTAATTGATCTCAATCTACCTGCTCCTATTGATGAATAA 1473 0.4094 MDSFRSINHQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMNEHSVQAKEERSNAAMLKFDAMRKKRDSLGYGDGSGAGNPTYGLRENPKKTMKFVHSNATNNVQQQFDKFCKECGKGFSSLKALCGHMACHSEKEKRKLVLDNQSDIETNSAARKSKRMRFKNVSSSSSNNNHLFSSLANGSSSMSEVEQEQEEVAKCLIMLSKDSTYNHSSRFAFFAEPSDNNSVVLETKSPSLDTKFTAKNVQNSASNAYRYEEKKLQLHSMKSKSAEIGYQSHNSDSGYVRYGPKKVDSADSNDGFFRSEVKSSKVGDMSWFDDYDVELGKLVSGDFEDSKEDGATRRFASKRRLIYDSLGSKKIAIGCNNDEKYKSEGWKYESLNTEGENGYDDDSTYESDENSTDSDSYPAAKPNNSKVLNGKKSSKGKKLKSKKSKEHECPICNRIFRSGQALGGHKRSHFLVGSEKNTLVIRPAGPPPAPCLIDLNLPAPIDE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0913 490 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 490 - -
Lal18g0913 490 SUPERFAMILY beta-beta-alpha zinc fingers 110 456 IPR036236 -
Lal18g0913 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Lal18g0913 490 ProSitePatterns Zinc finger C2H2 type domain signature. 19 39 IPR013087 -
Lal18g0913 490 MobiDBLite consensus disorder prediction 397 417 - -
Lal18g0913 490 MobiDBLite consensus disorder prediction 162 187 - -
Lal18g0913 490 MobiDBLite consensus disorder prediction 379 433 - -
Lal18g0913 490 MobiDBLite consensus disorder prediction 382 396 - -
Lal18g0913 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 44 IPR013087 -
Lal18g0913 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 434 456 IPR013087 -
Lal18g0913 490 MobiDBLite consensus disorder prediction 151 187 - -
Lal18g0913 490 SMART c2h2final6 17 39 IPR013087 -
Lal18g0913 490 SMART c2h2final6 109 131 IPR013087 -
Lal18g0913 490 SMART c2h2final6 434 456 IPR013087 -
Lal18g0913 490 Gene3D Classic Zinc Finger 3 69 - -
Lal18g0913 490 SUPERFAMILY beta-beta-alpha zinc fingers 13 44 IPR036236 -
Lal18g0913 490 Pfam C2H2-type zinc finger 17 40 - -
Lal18g0913 490 Pfam C2H2-type zinc finger 434 456 - -
Lal18g0913 490 Pfam C2H2-type zinc finger 111 133 - -
Lal18g0913 490 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Lal18g0913 490 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 490 - -
Lal18g0913 490 ProSitePatterns Zinc finger C2H2 type domain signature. 436 456 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0913 Lal-Chr18 11851582 11853454 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal18g0913 zf-C2H2_6 8.2e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0913 18 11851582 11853454 Lal18g0913 18 11851582 11853454 ECH