Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0619 ATGAAAACCCTCTTGCTTCATTCTTATCCCTTTTTCTTTTGCATAACCATTTCTATCATCTTAACCAATATTACATCACATGTTTCTGCTAATGATTATAGAAAGTGCTATGCCAATAACACTTATACCTGTGGAACCATCACAAACCTCACGTACCCATTCTCTGGAGGAACTAGACCAGAGTATTGTGGTGAGCCTAACTTGCAGGTAAATTGTGTAAACGCTACTGTTCCAAAGTTCTCTGTCAATTCAGTGACATATAGGATTATTGTCTGGGACTTGAAAACACAGACTCTAACAGTGGCTAGGGATGATTTATGGGATAGTGTGTGTTTTAGTAGTAACCATGCTACTAGTTTTGAAAACACAGTGTTTCATTTTAATGGTGGGCTTGCAAATGTGACACTTTTATATGATTGCACTTCCAATACACAACCTACTCCATATAGAGAAGATTGTGGTGGAGGCAAATATGTTTATTATGCTGCTGGAATTTTGCCTAGTAACTATTGCAAAAGTATAGTTGTTCCAATTTCTGAAAACGTAGCTAAAGATGTAACTAATGATCCAAGTATTATCCCAAAAGCACTACAAAATGGTTTTGAGTTGAAATGGGACCAAAGTTATGCTGAGTGCAGCACTTGTGTTGAGACTGGTGGGGTGTGTGGTAACAATGATGCCCTATTTGGCTGTTTCTGCAAGAATGGAACTATATGTCAAGGTAAAAGCAAAAGCAAAGTAGGTGTTGCAATAGGTGCTACTGTAGGAGCTGTTGTTGCCCTTGTTGCCATTATTGGATTTGTATGCTTTATGGTGAAAAGAAAGAAAAAAATTGCTGCTACTACTAAACAATCTAGAAGCCATGACTTCTTTATGCCTCCTTCAAGCAATGATGATACTTTTACCTCTACAACTAATATGTCTCAAAGTGTCCCTTCTTACGTATCTTCCAAGACTGACTCAGTTCCGCCGATGAAGAGTTTCTACTTCGGCGTCCAAGTGTTTACCATTGCTGAATTAGAGGAAGCTACAGATAATTTTCACCCTTCTAGAGAGATTGGTGAAGGAGGTTTTGGTACTGTATACAAAGGTGAACTCAAAGATGGACGCGTGGTTGCAGTGAAACGCCATTACGAAAGCAATTTTAAAAGAGTTCAGCAGTTCATGAATGAAGTTGAGATTTTGGCCAAGTTAAGGCATAAGAACTTGGTAACACTCTATGGATGTACCTCTAGGCATAGCAGAGAACTTCTGCTTGTTTATGAATTCATATCCAATGGAACAGTGGCTGATCATCTCCATGGAAATAGAGTGAATTCTAATTTCGTATCTTGGCCTGTAAGACTAAATATTGCTATCGAAACAGCCGAGGCACTAGCCTTCCTCCATGCATCAGATGTCATACACCGCGATGTTAAATCGAACAACATTCTCCTGGATGACAAGTTTCGCGTTAAGGTTGCTGACTTTGGTCTGTCAAGGTTGTTCCCGAATGACGCTACTCATGTGTCAACTGCTCCTCAAGGAACACCTGGTTATGTTGACCCTGAGTATTATCAGTGCTACCAACTCAACGATAAGAGTGATGTTTATAGCTTCGGAGTGCTCTTAGCCGAGCTTATATCATCGCTACAAGCCGTGGATGTTAGCAGGCATCGCAATGATGTGAATTTAGCCAACATGGCCCTCAATAAAATTCAAAACCAAGAAGTGAATGACTTTGTTGATCCACATCTTGGATATGACAAGGACTATTCTATAAGGAAGATGACAACAGGAGTAGCAGAATTGGCATTTAGGTGCTTGCAGCAACAGAGAGATATGAGACCCTCCATGGATGAGGTGCTACAAGTCTTGAAAGGAATCAAGAGTGATGAGCCTGGTGCAATGGAAGCTGAGGTACTGAATGTTAGGAAAGAAGATGTTATACTTTCTAACAACATTCCTTATCCACTTTCTTCAACTGATTCATTTGATGATAAATGGCAGGAGACACTAAGAAGAACTGCTTAA 2013 0.3984 MKTLLLHSYPFFFCITISIILTNITSHVSANDYRKCYANNTYTCGTITNLTYPFSGGTRPEYCGEPNLQVNCVNATVPKFSVNSVTYRIIVWDLKTQTLTVARDDLWDSVCFSSNHATSFENTVFHFNGGLANVTLLYDCTSNTQPTPYREDCGGGKYVYYAAGILPSNYCKSIVVPISENVAKDVTNDPSIIPKALQNGFELKWDQSYAECSTCVETGGVCGNNDALFGCFCKNGTICQGKSKSKVGVAIGATVGAVVALVAIIGFVCFMVKRKKKIAATTKQSRSHDFFMPPSSNDDTFTSTTNMSQSVPSYVSSKTDSVPPMKSFYFGVQVFTIAELEEATDNFHPSREIGEGGFGTVYKGELKDGRVVAVKRHYESNFKRVQQFMNEVEILAKLRHKNLVTLYGCTSRHSRELLLVYEFISNGTVADHLHGNRVNSNFVSWPVRLNIAIETAEALAFLHASDVIHRDVKSNNILLDDKFRVKVADFGLSRLFPNDATHVSTAPQGTPGYVDPEYYQCYQLNDKSDVYSFGVLLAELISSLQAVDVSRHRNDVNLANMALNKIQNQEVNDFVDPHLGYDKDYSIRKMTTGVAELAFRCLQQQRDMRPSMDEVLQVLKGIKSDEPGAMEAEVLNVRKEDVILSNNIPYPLSSTDSFDDKWQETLRRTA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0619 670 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Lal18g0619 670 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 15 663 - -
Lal18g0619 670 Pfam Wall-associated receptor kinase C-terminal 169 235 IPR032872 -
Lal18g0619 670 SMART serkin_6 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0619 670 Pfam Wall-associated receptor kinase galacturonan-binding 43 103 IPR025287 GO:0030247
Lal18g0619 670 Gene3D Transferase(Phosphotransferase) domain 1 424 632 - -
Lal18g0619 670 SUPERFAMILY Protein kinase-like (PK-like) 321 625 IPR011009 -
Lal18g0619 670 CDD STKc_IRAK 353 622 - -
Lal18g0619 670 ProSiteProfiles Protein kinase domain profile. 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0619 670 Pfam Protein kinase domain 348 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0619 670 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 663 IPR044652 -
Lal18g0619 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Lal18g0619 670 Gene3D Phosphorylase Kinase; domain 1 322 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0619 Lal-Chr18 5324975 5330847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0619 42 662 Receptor kinase-like Gene Family AT1G25390 40.775 1.72e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lal18g0619 Pkinase 1.3e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0619 18 5324975 5330847 Lal18g0619 18 5324975 5330847 ECH
Lal6g1011 6 7232646 7243254 Lal18g0619 18 5324975 5330847 ECH