Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0568 ATGGCTTCTCCTTCTCCAAATGCCTCCCCTTCTTCTGCTGTTCCTCCAATTGGTGTTTCATTACCACTACCTACAACAAATTCTTTCATTCCACCATCTTCTCAGCCAAATCAAACCTCTAATTCCATTGACCCCTCAACTCCACCTCCTTCTCTTCCTCAGTTAGTGCCTGCACCACCTCCTCTATCCCCTCCCCTTTCTCTTCCACAATCAACTACACCGCCGCCGGTGATTTCACCACCTATTTCTCCACTACCACCATTTGCAGCATCACCACCACCATTTGCAGCATCACCACCACCTCAAGCTCCCATTGCTGCCCCACCTCCAGCTCAGACTTCACCATCCCTCCCAAATTTGTCTCCACCTCCACCAGTACTAGCTAGTTCGCCTCTTCCTCAGCCCTCAAATCTACCTCCTTCTCCTCCTCCAGCCAATGTGCCAAAGCCACCATCCACCACTTCTCCTCCTCCCCCAAAGAAAAAGCATACGCCTTCGCCTCCTTCACGAGCATCCCCTCCATCTGTTTCTCAATCCCCTCCTTCCCCTGATGCTCCTCCTCCATCCACATTGCCATCAACTTCTCTGCCTTCGGCCGATGTTCCACCTCCATCCACATTGCCATTGACAACCCCTCCTTTAGTCTCATCACCTCCAACTTCTTTGCCTTTGCCTAATAAGACAGCAGCCGGGGGTCCAACTGTAGCTCTACCCTCTATTCCAACTGAGAAACCCACTGCTAGACCAGCTAATGGGAATGACACTGATATTGTATCCAGAAAAACCACATCTTCGCATTCGGGAGGGTCGAACATTGCAGGCACTGTGGCTGTTGGCATTATAGTTGGGTTTTTTGTTCTCAGCCTTCTTGTTATGGCTGTGTGGTTTGTAAAGAAAACGAAGAAGGGAACCAGATTGAAAATTGGTTTCCCTAAGGCTTCTCCATTTCCCTCATCTCACAATTCAGGTACATTATTCTTGTGGCCACAATCTCCAGCTAACTTTGTAGGTAGTGCCTCTGGTACTGATTTTGTGTATTCACCATCAGAACCCAGTGGAGTTGGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATTCAAGCTACAAATGGGTTTTCAGAACAAAATATGTTGGGAGAAGGTGGATTTGGTTGTGTGTACAAAGGTTTGCTCATAGATGGAAGAGAAGTGGCTGTGAAGCAACTCAAAGTTGGTGGTGGGCAAGGGGAACGGGAATTCAAAGCAGAAGTTGAGATTATTAGCCGTGTTCATCATCGCCACCTAGTTTCCTTGGTGGGTTACTGTATGTCCGATCATCAAAGGTTGCTTGTCTACGATTATCTTCCCAATGATACTCTTCATTACCATCTTCATGGCAATAACAGACCTGTTCTCGATTGGCCTACCAGAGTCAAGGTTGCCGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGTCATCCACGCATTATTCATCGAGACATTAAGTCATCAAACATCCTTCTCGATCAAAACTTTGAAGCTCAAGTTTCAGACTTTGGGCTTGCAAAATTGGCATTGGATTCATGTACTCATGTATCCACACGTGTAATGGGAACCTTTGGGTACATGGCACCGGAATATGCAACAAGTGGGAAATTGACTGAAAAGTCTGATGTATATTCCTTCGGGGTTGTGCTTTTAGAGCTAATTACTGGTCGGAAGCCTGTAGACACCTCTCAGCCAATTGGTGATGAGAGCTTGGTTGAATGGGCTCGACCTCTGTTGACGGTAACACTTGAAAGTGAGGACTTTGAGGTTTTGGTGGATCCAAGACTGGGAAAGAACTACAATAGAGATGAAATGTTTAGGATGATTGAGGCTGCTGCAGCCTGCGTGCGTCACTCTGCAGTAAAGAGGCCAAAGATGAGCCAGGTAGTGAGAGCTTTAGATTCCTTAGATGGATTTCTGGATCTCAATAATGGAGTGAAACCCGGGCAGAGTTCAGTCTTCGATACCGCACAGCGGCAATCTGCGGAAATCAGAATGTTTAGGAGGATGGCTTTTGGTAGCCAAGATAGTTCCAATTTTTGTAATGAATCTCAAAGCAGCTTGAGGAGTAGAGAGCAATAG 2121 0.4663 MASPSPNASPSSAVPPIGVSLPLPTTNSFIPPSSQPNQTSNSIDPSTPPPSLPQLVPAPPPLSPPLSLPQSTTPPPVISPPISPLPPFAASPPPFAASPPPQAPIAAPPPAQTSPSLPNLSPPPPVLASSPLPQPSNLPPSPPPANVPKPPSTTSPPPPKKKHTPSPPSRASPPSVSQSPPSPDAPPPSTLPSTSLPSADVPPPSTLPLTTPPLVSSPPTSLPLPNKTAAGGPTVALPSIPTEKPTARPANGNDTDIVSRKTTSSHSGGSNIAGTVAVGIIVGFFVLSLLVMAVWFVKKTKKGTRLKIGFPKASPFPSSHNSGTLFLWPQSPANFVGSASGTDFVYSPSEPSGVGSSRSWFTYEELIQATNGFSEQNMLGEGGFGCVYKGLLIDGREVAVKQLKVGGGQGEREFKAEVEIISRVHHRHLVSLVGYCMSDHQRLLVYDYLPNDTLHYHLHGNNRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDQNFEAQVSDFGLAKLALDSCTHVSTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDTSQPIGDESLVEWARPLLTVTLESEDFEVLVDPRLGKNYNRDEMFRMIEAAAACVRHSAVKRPKMSQVVRALDSLDGFLDLNNGVKPGQSSVFDTAQRQSAEIRMFRRMAFGSQDSSNFCNESQSSLRSREQ 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0568 706 CDD STKc_IRAK 379 649 - -
Lal18g0568 706 MobiDBLite consensus disorder prediction 46 220 - -
Lal18g0568 706 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 84 696 - -
Lal18g0568 706 Gene3D Transferase(Phosphotransferase) domain 1 449 656 - -
Lal18g0568 706 Pfam Protein tyrosine and serine/threonine kinase 376 646 IPR001245 GO:0004672|GO:0006468
Lal18g0568 706 MobiDBLite consensus disorder prediction 21 45 - -
Lal18g0568 706 ProSiteProfiles Protein kinase domain profile. 373 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0568 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Lal18g0568 706 SUPERFAMILY Protein kinase-like (PK-like) 350 646 IPR011009 -
Lal18g0568 706 MobiDBLite consensus disorder prediction 246 270 - -
Lal18g0568 706 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 84 696 - -
Lal18g0568 706 SMART serkin_6 373 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0568 706 Gene3D Phosphorylase Kinase; domain 1 348 448 - -
Lal18g0568 706 MobiDBLite consensus disorder prediction 1 270 - -
Lal18g0568 706 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0568 Lal-Chr18 4760367 4772597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0568 243 706 Trihelix Transcription Factor Family AT5G38560 66.875 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal18g0568 PK_Tyr_Ser-Thr 7.7e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0568 18 4760367 4772597 Lal18g0568 18 4760367 4772597 ECH
Lal6g0722 6 4820804 4824994 Lal18g0568 18 4760367 4772597 LSH
Lal18g0568 18 4760367 4772597 Lal22g1315 22 15977254 15982943 LSH
Lal18g0568 18 4760367 4772597 Lal6g1636 6 19045654 19052070 LSH