LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g0279	ATGGCTTCAGAGACGAAGATCGTGAATCTGGCAGAGGAAGCAAAGCTTGCAAGAGAAGGTGTTAAGGCTCCAAGTTATGCTCTTCTCACTATCTCCAAATCTCTACTTGCTGGTGGTGTTGCTGGAGGATTATCAAGAACAGCGGTTGCTCCACTCGAACGGATGAAAATTTTGCTGCAGGTCCAGAATCCTCACAACATAAAATACAACGGAACAATTCAAGGCCTAAAATATATATGGAGAACCGAAGGTTTTCGTGGGCTGTTCAAAGGGAATGGCACTAATTGTGCTCGAATTGTCCCTAATTCTGCAGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAGGCTATACTACAGCTGTATCGACAAAGAACTGGAAATGAGGATGCTCAGTTGACTCCTGTTTTACGTCTTGGAGCTGGAGCATGTGCTGGAATAATCGCCATGTCTGCAACGTATCCAATGGACATGGTTCGAGGCAGGATAACTGTACAGACAGAGAAGTCCCCTTTCCACTACCGAGGAATGTTCCATGCTCTGTCAACTATACTTAAGGAAGAAGGCCCACGTGCTTTATATAAGGGCTGGCTTCCTTCAGTCATTGGAGTTGTTCCTTATGTGGGTCTCAATTTTGCTGTGTATGAGTCTTTGAAAGATTGGTTAGTAACATCAAATCCTTTTGGTCTAGTTCAAGATTCTGAGTTGAGCGTGGTAACTCGCCTGGCATGTGGTGCCGCAGCTGGAACCGTTGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGTGGGTTGGAACCATGCTTCTTCTGTTGTAGCTGGTGATGGAAGAGCCAAGGCCCCACTTGAATACACTGGCATGGTTGATGCATTTAGGAAAACTGTCCGGTATGAGGGATTTGGTGCATTATACAAGGGTTTGGTGCCCAATTCTGTAAAGGTGGTCCCATCAATAGCAATTGCTTTTGTAACATACGAGGTGGTGAAGGATGTATTAGGAGTGGAGATCAGAATATCAGATTGA	1038	0.4489	MASETKIVNLAEEAKLAREGVKAPSYALLTISKSLLAGGVAGGLSRTAVAPLERMKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKAILQLYRQRTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPFHYRGMFHALSTILKEEGPRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLVTSNPFGLVQDSELSVVTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHASSVVAGDGRAKAPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVEIRISD	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g0279	345	SUPERFAMILY	Mitochondrial carrier	30	332	IPR023395	-
	Lal18g0279	345	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	29	116	IPR018108	-
	Lal18g0279	345	PRINTS	Mitochondrial carrier protein signature	34	47	IPR002067	GO:0055085
	Lal18g0279	345	PRINTS	Mitochondrial carrier protein signature	47	61	IPR002067	GO:0055085
	Lal18g0279	345	PRINTS	Mitochondrial carrier protein signature	91	111	IPR002067	GO:0055085
	Lal18g0279	345	PRINTS	Mitochondrial carrier protein signature	147	165	IPR002067	GO:0055085
	Lal18g0279	345	PRINTS	Mitochondrial carrier protein signature	193	211	IPR002067	GO:0055085
	Lal18g0279	345	PRINTS	Mitochondrial carrier protein signature	244	266	IPR002067	GO:0055085
	Lal18g0279	345	PANTHER	MITOCHONDRIAL ADENINE NUCLEOTIDE TRANSPORTER ADNT1	3	340	-	-
	Lal18g0279	345	Pfam	Mitochondrial carrier protein	132	224	IPR018108	-
	Lal18g0279	345	Pfam	Mitochondrial carrier protein	234	337	IPR018108	-
	Lal18g0279	345	Pfam	Mitochondrial carrier protein	30	117	IPR018108	-
	Lal18g0279	345	Gene3D	Mitochondrial carrier domain	28	339	IPR023395	-
	Lal18g0279	345	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	235	336	IPR018108	-
	Lal18g0279	345	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	132	220	IPR018108	-
	Lal18g0279	345	PANTHER	SOLUTE CARRIER FAMILY 25	3	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g0279	Lal-Chr18	2281234	2285673	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g0279	32	340	EF-hand Containing Proteins	AT5G51050	39.355	8.89e-69	221

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal18g0279	18	2281234	2285673	Lal18g0279	18	2281234	2285673	ECH
	Lal22g0594	22	4187165	4192363	Lal18g0279	18	2281234	2285673	LSH
	Lal18g0279	18	2281234	2285673	Lal22g0594	22	4187165	4192363	PCT
	Lal18g0279	18	2281234	2285673	Lal18g0279	18	2281234	2285673	PCT
	Lal22g0594	22	4187165	4192363	Lal18g0279	18	2281234	2285673	PCT