Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1035 ATGCTGGAAACTAAAGACCCCACAATTACGCTATTTGGCCATAAGATTCCCTTTCCGGAGGAGGCTCCTCCCATTTCCGGCGACTATATGGACTCCTCCGTGGCGGTGATGGATGTCTACAAAGAAGAAGAAGAGTTAGAGTCTGAGGAGGAAGAGAAATACCAAGAAGTAAAGCATAAGAAGCAGAATATTAGGTTTGTTCACTTCCTTCTCTTGTCCATGGATGGAATAAACTCATTGCTAGTTTATCGACACCAACAAGGTCCAACAAATTGGGCATATAGTTGGGATCCTCAAGCTGAAAATGTTTCTGAGAAAAAGAAAGAGGATGATTCTCTTCCAAATGCTGCAGAGACTAATAAGAATTCAGGGGCATTTCCTGAGGCTATTCTGAACCCAAAGACACCTTCAGTAGACGAAGAAACTATAAATTCAAAGAAGGGAGAGTTAGAGACCGATCAAATTGATTCAACCAACAACTCAGAAGATAAAACCCCGAATAAGCCAGATAAAGTGATTCCATGTCCACGCTGCAATAGCATGGACACAAAGTTCTGTTACTATAACAATTACAATGTCAACCAGCCACGATATTTCTGCAAAGCATGCCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTACCAGTTGGGGCTGGGCGACGAAAGAACAAGAACTTAGCCTCACATTATCGCCATATCACAATTTCTGAGGGACTTCAGACTTCTAGAATTGAGGTTCCTAATGCAACCCATCTTCCTACTTTAAAAACAAATGTTAGAGTCCTCGGCTTTGGATTAGACCAACCAATTTGTGATTCCATAGCATCTGTCATTAACCTTTCAGATAAAGAAGTTCTTAATGGCACACAAAATGGGTTTCTTAGCAATGAGGATCAAAGGAACCCTTGCGTAGTTGGGGAGAAAGGTGGTGACTGCTCAACTACGTCTTCCATTACGGTTTCAAATTCCTTAGAGGAAAATAGCAAAAGCACTTCCCAGGAATCTTTACAACTACCACATAATGGTTACCCTCCTCATGTTCCTTGTGTTGCTAGTGTTCCTTGGCCTTATCCATGGAATTATTCAATTCCCCCACCTGCTTTCTGTCCTCCAGGGTTTCCCATGTCATTCTATCCAGCAGCCTTTTGGAATTGCAGTGTGCCCGGGAATTGGAATGTTCCCTGGTTATCCCCACATTCATCTGCCCCAACCCCAAACTCTCCAAGCTCTGGTCAAAAGTCGCCGACTCTTGGTAAGCGCTCAAGAGATGATGACATGACTGAGCAAGACTATTCACATAAAGATGAACCATCAAGGCAGAGGAACGGACCTGTTCTCGTCCCGAAAACCTTAAGAATTGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACACTAGGAATTAAGAATGAATTTGTCAGTGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAAGATGGAAAGAAAAATAATCATGTTGTTGAAACCTTGCCAGCGTTGCGGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACTCCTGA 1569 0.4308 MLETKDPTITLFGHKIPFPEEAPPISGDYMDSSVAVMDVYKEEEELESEEEEKYQEVKHKKQNIRFVHFLLLSMDGINSLLVYRHQQGPTNWAYSWDPQAENVSEKKKEDDSLPNAAETNKNSGAFPEAILNPKTPSVDEETINSKKGELETDQIDSTNNSEDKTPNKPDKVIPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNLASHYRHITISEGLQTSRIEVPNATHLPTLKTNVRVLGFGLDQPICDSIASVINLSDKEVLNGTQNGFLSNEDQRNPCVVGEKGGDCSTTSSITVSNSLEENSKSTSQESLQLPHNGYPPHVPCVASVPWPYPWNYSIPPPAFCPPGFPMSFYPAAFWNCSVPGNWNVPWLSPHSSAPTPNSPSSGQKSPTLGKRSRDDDMTEQDYSHKDEPSRQRNGPVLVPKTLRIDDPSEAAKSSIWATLGIKNEFVSGGGMFKAFQSKKDGKKNNHVVETLPALRANPAALSRSLNFHENS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1035 522 Coils Coil 40 63 - -
Lal17g1035 522 MobiDBLite consensus disorder prediction 419 442 - -
Lal17g1035 522 MobiDBLite consensus disorder prediction 103 171 - -
Lal17g1035 522 Pfam Dof domain, zinc finger 170 227 IPR003851 GO:0003677|GO:0006355
Lal17g1035 522 ProSitePatterns Zinc finger Dof-type signature. 175 211 IPR003851 GO:0003677|GO:0006355
Lal17g1035 522 PANTHER CYCLIC DOF FACTOR 2 1 521 IPR045174 GO:0003700|GO:0006355
Lal17g1035 522 MobiDBLite consensus disorder prediction 401 455 - -
Lal17g1035 522 ProSiteProfiles Zinc finger Dof-type profile. 173 227 IPR003851 GO:0003677|GO:0006355
Lal17g1035 522 PANTHER CYCLIC DOF FACTOR 1 1 521 - -
Lal17g1035 522 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1035 Lal-Chr17 8707313 8710972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1035 141 520 C2C2-Dof Transcription Factor Family AT3G47500 50.376 6.53e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal17g1035 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1035 - - jre:109000197 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1437 12 17569325 17573124 Lal17g1035 17 8707313 8710972 ECH
Lal13g1809 13 17584731 17588165 Lal17g1035 17 8707313 8710972 ECH
Lal24g1371 24 15003274 15007675 Lal17g1035 17 8707313 8710972 ECH
Lal22g0743 22 5329464 5335579 Lal17g1035 17 8707313 8710972 ECH
Lal17g1035 17 8707313 8710972 Lal17g1035 17 8707313 8710972 ECH