Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0583 ATGGACACAAGTCAGTGGGCACAGGGTATTGGAGTGGTTAAACCTATGGAAGGTTCTTCAAAACCACCTCAATCTGAACCTCCTATGTTAGAGAGATCAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACAAACACTAAATTCTGTTACTACAATAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGCAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGAAATGTTCCTGTTGGTGGTGGCTCAAGAAAGAACAAAAGATCCATTAATCCTTCATCATCAACAACAACAACAACAACTACTACTACATCTTCACAACATGGTCCATCAAATAAGAAGCTTCCTGATCTGTCAACACCACCAAACAATTTCCCTCACTCAGCTTCTCAGAACCCAAAGATCCATCAAGGCCAAGATCTTAACTTAGCATATCCACCACCAACTGAAGACTATAGCACCTTATCTAAATTTATTGAGGTTCCTTATAGCACTGAATTAGACAAAACTCATCACCACCACCTTCAAAATCAAAGTTCCTCAGCTATGGAACTTCTCAAAACTGGGATCACTACTTCTTTCATGCCTATGACCTTGTCAGATTCCAGCACAATGTATAACTCAGCTGGTTTTCCTCCTTTGCAAGATTTTATTAAGCCTGGCCTTAACTTCAGTCTTGAAGGGTTTGAAAATGGCTATGGTGGTATCCATGGAATTCATCAAGATGGTGCTAATGGTGCAAGGATCTTGTTTCCTCCTCCAGAGAATTTGAAGCAACAGGTTCCAAGCAGTGCTGAGTTTCACGAGCAGAATAGAAATCAAGGGGATTCAAGTGGTTATTGGAATGGAATGTTAGGTGGTGGATCATGGTAG 900 0.4156 MDTSQWAQGIGVVKPMEGSSKPPQSEPPMLERSRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSINPSSSTTTTTTTTTSSQHGPSNKKLPDLSTPPNNFPHSASQNPKIHQGQDLNLAYPPPTEDYSTLSKFIEVPYSTELDKTHHHHLQNQSSSAMELLKTGITTSFMPMTLSDSSTMYNSAGFPPLQDFIKPGLNFSLEGFENGYGGIHGIHQDGANGARILFPPPENLKQQVPSSAEFHEQNRNQGDSSGYWNGMLGGGSW 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0583 299 MobiDBLite consensus disorder prediction 95 147 - -
Lal17g0583 299 MobiDBLite consensus disorder prediction 273 299 - -
Lal17g0583 299 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Lal17g0583 299 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 296 - -
Lal17g0583 299 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Lal17g0583 299 MobiDBLite consensus disorder prediction 273 289 - -
Lal17g0583 299 MobiDBLite consensus disorder prediction 1 44 - -
Lal17g0583 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 296 IPR045174 GO:0003700|GO:0006355
Lal17g0583 299 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
Lal17g0583 299 MobiDBLite consensus disorder prediction 81 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0583 Lal-Chr17 4163760 4166730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0583 30 299 C2C2-Dof Transcription Factor Family AT3G61850 42.759 5.42e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal17g0583 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0583 - - lang:109326143 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0583 17 4163760 4166730 Lal4g0508 4 3683890 3685172 ECH
Lal22g0568 22 3873537 3874364 Lal17g0583 17 4163760 4166730 ECH
Lal5g0049 5 538478 539173 Lal17g0583 17 4163760 4166730 ECH
Lal18g1044 18 13449850 13451997 Lal17g0583 17 4163760 4166730 ECH
Lal17g0583 17 4163760 4166730 Lal17g0583 17 4163760 4166730 ECH