Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0531 ATGTTCCCTCAAAGACATAGTATTATTAGTGGTAGCATGCTAGAACAAATGTTACATCTTCAATCTAATCATATGCCCCTTCCAACACCAATTATGGACAAATCAAGTTCATGGTCATGGAAACCACACATTGAGGTAGCACCAAATTGCCCTCGTTGCGCTTCCACCAACACAAAATTCTGTTACTACAATAACTACAGCTTGTCTCAGCCCAGATACTTCTGCAAAGGCTGCAGGCGCTATTGGACCAAAGGCGGCTCTCTTCGCAGCGTTCCTGTCGGGGGTGGCTGCCGCAAGAACCGCCGTGGGAAATTGGCAAGGCACTCACCCCAAAGTGGGCGACTTGCCAATGACAATTCTGGTTCTGATGACCGAGATTCGTCATCAGAAACCAATGTTGTGTCTAATGATATAGACATGGCAGTTGTGTTTGCCAAATTCTTGAACCAAAATCCAAATTCTGGTGAGGCTAATAATAACCCATCAGTGTGTTCGAATAAATCGCCAACAAGATCTTCGACACAAGAATTAAGTATTGAAGCTGAGATTGATGCAGTGGTGCAGGCACAGGAGAAGCCATGTGATGATCCTAATGATGCTGATGGAGGGAAAATTGCTGGGGTCGTTGAGGAATTGAGTTTTAGTGGGATTGATGAGTTGAATGGATTCTTAGGTGAAGATATTATTTGGTCTAATGATGTTACTATGTTTTCTTCAGTTAATGCTAACTGGCAACAACCAATGATGCAAATGCAATTGCAAGAGTTAGAGGAATCTTTGATGCCATTGAATGAAGATGGTGATCAAATCTTACCAATTTCTTCAACCATCAATTTGTTAAATGATAGTTGGTGTACTTGGAGTTCCTTTGATCTTCCAACCATGGACCTTTTCTCATCAACACCTTGA 909 0.4213 MFPQRHSIISGSMLEQMLHLQSNHMPLPTPIMDKSSSWSWKPHIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRSVPVGGGCRKNRRGKLARHSPQSGRLANDNSGSDDRDSSSETNVVSNDIDMAVVFAKFLNQNPNSGEANNNPSVCSNKSPTRSSTQELSIEAEIDAVVQAQEKPCDDPNDADGGKIAGVVEELSFSGIDELNGFLGEDIIWSNDVTMFSSVNANWQQPMMQMQLQELEESLMPLNEDGDQILPISSTINLLNDSWCTWSSFDLPTMDLFSSTP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0531 302 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Lal17g0531 302 MobiDBLite consensus disorder prediction 93 132 - -
Lal17g0531 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 34 259 - -
Lal17g0531 302 Pfam Dof domain, zinc finger 48 102 IPR003851 GO:0003677|GO:0006355
Lal17g0531 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 259 IPR045174 GO:0003700|GO:0006355
Lal17g0531 302 MobiDBLite consensus disorder prediction 152 176 - -
Lal17g0531 302 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0531 Lal-Chr17 3710204 3711112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0531 13 177 C2C2-Dof Transcription Factor Family AT1G21340 46.429 4.82e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal17g0531 zf-Dof 3.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0531 - - mtr:MTR_3g090430 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0531 17 3710204 3711112 Lal17g0531 17 3710204 3711112 ECH
Lal17g0531 17 3710204 3711112 Lal4g0462 4 3253907 3254749 LSH