Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0073 ATGTGGACTGAAGCTGGCTTGGGCCTACCGGTGGAGATACCTGAAAAGATAGTATTGGTTGGTGCCGTTGTTCCAATGATAACAAAGAAGTTAATGGTTAATCTAGAAGTGTTTACCAACCATCACACCTTTCCTTCAGTGTCTTATGCAGAGATGTTGTGTGGGAATAGTCCTCTGTTACCTCATAACTACAGTGAAGCACAAAATGAGGTGAAGTTTATCACAGGTACCAGTGACACAGTTACTATGGCATCTATTGATAGAAATGTTGAAAGGGCACAAATAGAAATTTTAGAGAGTGAGCGAAGTATACAGTATCAGGGCTTATCTCTTAGTTTAGGGACACTCATGCCTTCTACTGCATCATCTGTCCCTCCATTTCAGTACCACTATCCCAACAACACTGGTTTCTCATCCTTAATGACAGATAATGATCTTATAAAAAATGAGGGTTTGTACAACCGTAACCCTTCACTCCAATCTGATCCATGCATGCAAGGATCACAAGGTTTTTCAAACAATGTCTTAAATTCTCAATACCTTAAGGCAGCACAGGAGTTACTTGATGAAATAGCTAATGTCCGAAATGCTTTGAGTTTGAAGCAACCCGGAATAGAAAAACAAGAAAACAACATTCGTGACATTGCATTAGATGGCTCCAAAGGTTCTGATGGAAAATCTTATAGACCTAATGGTTCTATAACCAACCCTTCTTGTGAACTACCACCTCAAGAACGACAGAACTTGTTGGACAAGAAGACAAAGCTTTTGGCACTGTTGGATGAGGTAGACAGAAGATACAGACAATACTGCCATCAAATGCAGATTGTGGTATCATCTTTGGATATGGTTGCTGGGTGTGGAGCAGCTGAACCATACACTACACTTGCTTTGGGAACAATTTCTCGCCACTTTCGTTGTTTGCGTGATGCTATTAGCAGCCAAATTCAAGCGACACAAAGATATCTTGGGGAACAAGAGGGAATACCGCGTCTACGCTATGTCGATCAGAAGCTTAGACAACAAAAGGCACTTCAGCAGCTTGGTGTAATGAGACAAGCATGGAGGCCTCAGAGGGGACTTCCTGAAACATCTGTTTCGATACTTCGTGCTTGGCTCTTTGAGCATTTTCTAAATCCTTATCCTAAGGATTCAGAGAAAATTATGCTAGCAAGGCAAACAGGCTTGTCCAGAGACCAGGTAGCAAATTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGATTGAGGAAATGTACAAAGAAGAGTTTGGTGATTCAGAGATGAGCTGCAATGTTTCATCTGAAAATATTCTCTTAGCTAAAACAGATAATATTCAAGCATCTGATAATAAGTGGGAAGAGTCTCAAGACAATTTAGTAACTGTTGATGACAGTATCCAACAAGGGCAACTTGATGGGTTTAGATCAGAACATGCATCTTCTACTAAAGAATTGAATAGAGGGATCTATAAAGGAGAAAGTTTGAAGGGTAACCAAAGCTTTAGCATGAACAATAATAATAACATTAACAGTTTTTATTCAAGTGGAGATGGCATCATAATGGTGTCTACTACTCCTTCTGCCACATATGATTTATCAGAGTTGGGTAACTTCATTGGGAGTGGCCACGTCTCTCTTGCATTGGAGTTGAGGAATTGTGAAAGTGATGGATTTGCTATGCACAATGATGGCAGCAATAAAAGTCGGAATCATCAGGAATTGGCTTCTTCCTCTGAGACTGATTTGGTAGATTATTATTTCACAGATTCAGGAAATCAACAACACAGGGATCTCTTGAAAGGTGGTGTACCATCACAAAGCAGAAAGAGAAAGGCAAATGCTGCTACTTTTATTGCAAGTTTTGTAAGGAAAAGGAATGCATCATGTTTAATAAGGAATCTTGTAAAAAAAACGGAACTAAAATCAAATGAGGTAGCCAGAATGTCCAACTCTATTACCCATCAAAACCAATTCCAGAACCAAGAGCTAGATGCTTATGGCTCTTCTTTAAGAAACAACAGTGCATATCCTGAGGCCTTAGGAGTATTTCCAAGCAGCATTCAATCCAGAATGTCACTAGCTGAGGGGTCAGAAATGAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGATAATGAGAGGAGTCATCAAACTCAAGGCCTGTCCCTTTCTTTAGGCTCTCACATACTTGTCCCTTCTGATGAATACAGACATAGACCCTTAAATCAGGGTCTCATGAACCCCAATTTCTTCATGCCTGGACAAGGAACAAGGGAACCATGTAATCCTTCAGTGGAGCAACAACAACATATAACTAGTGAATACCTTTTCGCCAGTGGTGGCACTTTTGCTTCATCTTCTATCTCATTGAACCTTTCTCCTTCAAACTCTTTTGGAACTGAGTCCTTTGCTGCTGTCATTAGGAACTCAAGATACCTCAAACCAGCACAATCCCTTCTTCAAGATATTGTTGGTGTTGGTGCAAATGTGATTGATCATAGAATGAATGTAAATTATGTGGATAAGTTGTTTCATGGGAGTAGAACAGGTTCAAGAACACTTTCCTCAGAGCTAAAAGCAGAGTTGAGGATTATTGGACCTTTATTATTAGCTGAGAAACAAGAACATCAAATGAAAATTGCAAAGTTGATTTCTTTGTTGGATGAGATAGAAAGCAGATATGAGAAATACTGCCATAAAATGGAGGAAGTGGAGTCATCTTTTGAAATGATAGCAGGTATAGGAGCTGCTAGGTGTTACACTGCTATGGCACTTCAAGCCATATCAATGCATTTTTGTAGCTTGAGAGATGCTATAGTGTCACAAATAAATGTGGAGAAGAGAAAACTCTCTCAAGATTTACATAAAATCAATAGTGGATTATCTCAGATAAGCCTATATGATAGAGACAATAGACATAGTAGAATGCCACTCCAACAACTTGGGATTGTTCAAACCCAACACCAAGTATGGAGACCCATCAGAGGGTTGCCTGAAACCTCAGTAGCAATTCTTCGTTCTTGGCTTTTTGAGCACTTTCTCCACCCTTATCCCAATGATTCTGAAAAGTTAATGCTTACATCTCAGACAGGTTTAACTAAAAACCAACTGTCAAATTGGTTCATAAATGCTCGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAACAAGAGTTTGGAGAGTCTTCAGCTGAAAACTATTTAACAAGAGAAGATACCACATATTATGTGGAGGATTGA 3255 0.3969 MWTEAGLGLPVEIPEKIVLVGAVVPMITKKLMVNLEVFTNHHTFPSVSYAEMLCGNSPLLPHNYSEAQNEVKFITGTSDTVTMASIDRNVERAQIEILESERSIQYQGLSLSLGTLMPSTASSVPPFQYHYPNNTGFSSLMTDNDLIKNEGLYNRNPSLQSDPCMQGSQGFSNNVLNSQYLKAAQELLDEIANVRNALSLKQPGIEKQENNIRDIALDGSKGSDGKSYRPNGSITNPSCELPPQERQNLLDKKTKLLALLDEVDRRYRQYCHQMQIVVSSLDMVAGCGAAEPYTTLALGTISRHFRCLRDAISSQIQATQRYLGEQEGIPRLRYVDQKLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLSRDQVANWFINARVRLWKPMIEEMYKEEFGDSEMSCNVSSENILLAKTDNIQASDNKWEESQDNLVTVDDSIQQGQLDGFRSEHASSTKELNRGIYKGESLKGNQSFSMNNNNNINSFYSSGDGIIMVSTTPSATYDLSELGNFIGSGHVSLALELRNCESDGFAMHNDGSNKSRNHQELASSSETDLVDYYFTDSGNQQHRDLLKGGVPSQSRKRKANAATFIASFVRKRNASCLIRNLVKKTELKSNEVARMSNSITHQNQFQNQELDAYGSSLRNNSAYPEALGVFPSSIQSRMSLAEGSEMSHTRHLMDLLGADNERSHQTQGLSLSLGSHILVPSDEYRHRPLNQGLMNPNFFMPGQGTREPCNPSVEQQQHITSEYLFASGGTFASSSISLNLSPSNSFGTESFAAVIRNSRYLKPAQSLLQDIVGVGANVIDHRMNVNYVDKLFHGSRTGSRTLSSELKAELRIIGPLLLAEKQEHQMKIAKLISLLDEIESRYEKYCHKMEEVESSFEMIAGIGAARCYTAMALQAISMHFCSLRDAIVSQINVEKRKLSQDLHKINSGLSQISLYDRDNRHSRMPLQQLGIVQTQHQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLTSQTGLTKNQLSNWFINARVRLWKPMIEEMYKQEFGESSAENYLTREDTTYYVED 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0073 1084 Coils Coil 876 910 - -
Lal17g0073 1084 Pfam Homeobox KN domain 1011 1050 IPR008422 GO:0003677|GO:0006355
Lal17g0073 1084 Pfam Homeobox KN domain 372 411 IPR008422 GO:0003677|GO:0006355
Lal17g0073 1084 Pfam Associated with HOX 175 313 IPR006563 -
Lal17g0073 1084 Pfam Associated with HOX 809 943 IPR006563 -
Lal17g0073 1084 SMART prehox3 804 944 IPR006563 -
Lal17g0073 1084 SMART prehox3 169 314 IPR006563 -
Lal17g0073 1084 SMART HOX_1 355 419 IPR001356 GO:0003677
Lal17g0073 1084 SMART HOX_1 994 1058 IPR001356 GO:0003677
Lal17g0073 1084 CDD homeodomain 994 1055 IPR001356 GO:0003677
Lal17g0073 1084 Gene3D - 990 1069 - -
Lal17g0073 1084 Gene3D - 352 429 - -
Lal17g0073 1084 ProSiteProfiles 'Homeobox' domain profile. 1013 1054 IPR001356 GO:0003677
Lal17g0073 1084 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 686 1072 - -
Lal17g0073 1084 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 63 575 - -
Lal17g0073 1084 CDD homeodomain 355 416 IPR001356 GO:0003677
Lal17g0073 1084 ProSiteProfiles 'Homeobox' domain profile. 352 415 IPR001356 GO:0003677
Lal17g0073 1084 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 575 - -
Lal17g0073 1084 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 686 1072 - -
Lal17g0073 1084 SUPERFAMILY Homeodomain-like 356 422 IPR009057 -
Lal17g0073 1084 MobiDBLite consensus disorder prediction 211 244 - -
Lal17g0073 1084 Coils Coil 177 197 - -
Lal17g0073 1084 SUPERFAMILY Homeodomain-like 1000 1061 IPR009057 -
Lal17g0073 1084 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0073 Lal-Chr17 448482 457513 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal17g0073 POX 2.4e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0073 17 448482 457513 Lal17g0073 17 448482 457513 ECH
Lal17g0073 17 448482 457513 Lal21g0140 21 971859 975256 LSH
Lal17g0073 17 448482 457513 Lal4g0089 4 541388 545016 LSH
Lal17g0073 17 448482 457513 Lal25g0542 25 3957838 3963436 PCT
Lal17g0073 17 448482 457513 Lal10g0864 10 16157930 16162433 PCT