Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0071 ATGAAGCTTATAGTGGACACGATGAGTATGAGTAACTCCCTCATCATTACAACCCCACATTTGTGTGATAACTGTGCTGCAAATCAGCCCACCACAATGCTGAAATCAGGCATTGGAATTGATGAGAGTAAGCAGTTGAAGAAGCCAGCACAGGCAAGTTCCAGAAAGGGGTGTATGAGGGGTAAAGGAGGCCCTGAAAATGCTAGCTGCAAGTACAAAGGTGTAAGACAGAGAACTTGGGGAAAGTGGGTTGCTGAAATTCGTGAACCAAATCGTGGTGCACGCCTCTGGCTTGGGACATTTGACACGTCGCATGATGCTGCCTTGGCTTATGATGCTGCAGCACGTAAGCTTTATGGTGCAGATGCAAAGCTCAATCTACCAGAGCTTTATGTGAATTCTCAGTGTAAAGCATCTTATGTTAGCACTCAAGTTTCACAAATGCAAGGAAATATGCAACTGCCTCACACAATGATTCAACAGAACTCGGATATGGCCACTTGCTATAATATGATGAATACCAATCCACCAGTGTCAATGGCTTCTGAGCAAGTTGGAGTTGGACCTATTTACAGCAACATCAATGAATCCATTGTGTCTCTCCCATGCTTGGATACTAATACTACTCAGCCACTTGAAACCTATGCAAAGCCAATAGAGAATGAAATGGAGCTTCATCCTTTGTGGGGGACAATGAATGAAGAAGGGTGGCCTGTGTTAGATGATTCAATCTATGCAGAGGCTGTTATGTCTCTAGATATTCCTATGATTGATGAAAGTGGAATTTATCAAACAAATGGAAACTTGACAGATGTGAATGTTTGGGATTATATGCACACTCCATGGTGCATGTAA 855 0.4292 MKLIVDTMSMSNSLIITTPHLCDNCAANQPTTMLKSGIGIDESKQLKKPAQASSRKGCMRGKGGPENASCKYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDAAARKLYGADAKLNLPELYVNSQCKASYVSTQVSQMQGNMQLPHTMIQQNSDMATCYNMMNTNPPVSMASEQVGVGPIYSNINESIVSLPCLDTNTTQPLETYAKPIENEMELHPLWGTMNEEGWPVLDDSIYAEAVMSLDIPMIDESGIYQTNGNLTDVNVWDYMHTPWCM 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0071 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 39 280 - -
Lal17g0071 284 Gene3D AP2/ERF domain 70 129 IPR036955 GO:0003700|GO:0006355
Lal17g0071 284 MobiDBLite consensus disorder prediction 45 65 - -
Lal17g0071 284 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Lal17g0071 284 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Lal17g0071 284 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Lal17g0071 284 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Lal17g0071 284 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Lal17g0071 284 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Lal17g0071 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 39 280 - -
Lal17g0071 284 SUPERFAMILY DNA-binding domain 71 128 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0071 Lal-Chr17 441453 442478 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal17g0071 AP2 3.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0071 17 441453 442478 Lal17g0071 17 441453 442478 ECH
Lal17g0071 17 441453 442478 Lal4g0087 4 531905 532669 LSH
Lal25g0541 25 3948285 3949037 Lal17g0071 17 441453 442478 PCT
Lal17g0071 17 441453 442478 Lal25g0541 25 3948285 3949037 PCT