Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1841 ATGGAAACTAGCTCAGTTTCTAAAGTATTGTTTGCATTTTGCTTAGCTTTGTACTTGAGTTCTAAGTTGATTAACTCAAGTGTCACCTATGATAGAAAAGCCATTATCATCAATGGCCAAAGGAGGATCCTTTTCTCTGGCTCCATACATTATCCCAGAAGTACCCCTGATATGTGGGAAGATCTGATTCAGAAGGGAAAAGAAGGAGGTTTAGATGTGATTGAAACTTATGTGTTTTGGAATGTTCATGAACCTTCTCAGGGCAATTATAATTTTGAAGGAAGATATGATCTTGTAAGATTCATAAAGACAATACAGAATGCAGGACTCTATGCTCATCTTAGAATTGGACCTTATTTTAGAATTTTGGGTAGCTTTCTTTTCTCACTATATATCTCCGACAAAGATCTGCGAATCCTGTCTCATATATTGCCTCGTGCTAATGAAAACATAGGATTTCCTGTTTGGTTGAAGTATGTTCCTGGCATAAGCTTTAGAACAGACAATGAACCTTTCAAGAGAGCAATGCAAGGGTTCACTGAGAAGATTGTAGGAATGATGAAGAGTGAGAATCTCTTTGAATCTCAGGGTGGCCCTATTATACTATCTCAGATTGAGAATGAGTATGGAGCACAAAGTAAGTTACTAGGAGCTGATGGACAAAATTATGTGAAATGGGCAGCAAAAATGGCTGTAGAGTTAGGAACTGGAGTGCCTTGGGTGATGTGCAAGGAAGATGATGCACCAGATCCAGTGATGAGACAAAATAAAAGCAGATCTAAGGTAAACAGATCAGATCTAGACTCATATATACTATATAGGTTTACCGAATTCGGAGGTCCGATACACAAAAGACCGGTACAGGATTTGGCATTTGCAGTTGCTCAATTTGTAACAAAAGGAGGATCCTTTATAAATTACTACATGTATCATGGAGGAACGAATTTCGGACGAACAGCCGGAGGCCCTTTCATCACTACTAGCTATGACTATGATGCTCCACTAGATGAGTATGGTTTGATTAGTGAACCGAAATATGGTCATCTAAAGGAGCTTCACAGGGCCATCAAAATGTGTGAGCGAGCTTTGGTTTCAACTGACCCAATTGTTACTTCATTAGGAGAGTTCCAACAGGCCGATGTATACTATTCGGAATCCGGAGATTGTGCTGCTTTTCTCTCAAATCATGATTCAAATTCATCTGTTAGAGTGTTGTTCAATAATATGCATTATAACCTGCCTCCTTGGTCCATTAGCGTCCTTCCCGATTGTAGAAATGTTGTCTTCAATACAGCAAAAGTTGGAGTGCAAACATCTCAGATGCAAATGCTGCCAACAAATAATCAAATGTTCTTATGGGAGAGCGTTGATGAAGATATTACTTCTATGGATGACAGCGCAGTTACCGCCCCCGGTCTCTTGGAACAGATAAATGTGACACGAGATACAAGTGATTATCTTTGGTATATAACTAGTGTTGATATAGGTTCATCGGAATCTTTTCTACGCGGAGGAGAAACCCCCACTCTCATTGTTCAGTCTACAGGCCATGCTGTACATGTTTTCATCAATGGTCAACTTTCTGGTTCTGCATTTGGAACGAGGGAATATAGGAGATTCAAATACGTGGACAAGGTCAACCTTCGGGCCGGAACAAACAGAATAGCTCTTCTCAGTGTTGCTGTTGGACTTCCTAATGTCGGAGGAAGTTATGAGACGTGGAACACAGGAATCTTAGGTCCAGTTGAACTCCATGGACTTGACCAGGGAAATTGGGACTTGTCCAGACAGAAATGGACTTACCAGACGCATAAGTTAGCTAACTTTCAAAACGAAAAAATATTAATAACCGATGCTTCCGAACAGGTCGGGCTGAAAGGAGAGGCCATGGATATTGTCTCTCCAAATGGTATCTCTTCTGTTCAGTGGATGCAGTCAGCAATAGTTATAAACAGAAACCAGCCACTAACATGGCACAAGACTTATTTCGATGCTCCGGACGGAGACGAACCGTTGGCATTGGATATGGAGGGTATGGGTAAAGGTCAAATATGGATTAATGGACAGAGTATCGGAAGATACTGGACAGCATTCGCTATTGGTAATTGCAATGACTGTAACTATGCCGGAGGATTCCGGCCTGCAAAGTGCCAATTTGGTTGTGGTCAACCAACCCAAAGATGGTACCATGTACCTAGATCTTGGTTGAAGCCAACTCAAAATCTACTGAGATCGGTGAGCAGCGTCTGCGCCGATGTGACAGAGTATCATCCGAATATTAAGAATTGGCACATCGAGAGCTATGGAAAAGCAGAAAAGTTCCATCCAGCAAAGGTTCACTTGCATTGTAGCCCTGGTCAGACGATTTCTTCGATTAAATTTGCAAGCTTTGGAACTCCTTTGGGCACTTGTGGGAATTACAAGCAAGGACCATGCCATTCTCCTACTTCCTATGCCATTTTAGAGAAGAAGTGTATAGGAAAACAAAGATGTGCAGTAACTGTAACAAACAGCATTTTTGGAGACCCATGTTCAAACGTGTTGAAGCGGTTATCAGTAGAAGCTGTGTGCTTTGCAACGAATTAA 2586 0.4134 METSSVSKVLFAFCLALYLSSKLINSSVTYDRKAIIINGQRRILFSGSIHYPRSTPDMWEDLIQKGKEGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVRFIKTIQNAGLYAHLRIGPYFRILGSFLFSLYISDKDLRILSHILPRANENIGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSENLFESQGGPIILSQIENEYGAQSKLLGADGQNYVKWAAKMAVELGTGVPWVMCKEDDAPDPVMRQNKSRSKVNRSDLDSYILYRFTEFGGPIHKRPVQDLAFAVAQFVTKGGSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLISEPKYGHLKELHRAIKMCERALVSTDPIVTSLGEFQQADVYYSESGDCAAFLSNHDSNSSVRVLFNNMHYNLPPWSISVLPDCRNVVFNTAKVGVQTSQMQMLPTNNQMFLWESVDEDITSMDDSAVTAPGLLEQINVTRDTSDYLWYITSVDIGSSESFLRGGETPTLIVQSTGHAVHVFINGQLSGSAFGTREYRRFKYVDKVNLRAGTNRIALLSVAVGLPNVGGSYETWNTGILGPVELHGLDQGNWDLSRQKWTYQTHKLANFQNEKILITDASEQVGLKGEAMDIVSPNGISSVQWMQSAIVINRNQPLTWHKTYFDAPDGDEPLALDMEGMGKGQIWINGQSIGRYWTAFAIGNCNDCNYAGGFRPAKCQFGCGQPTQRWYHVPRSWLKPTQNLLRSVSSVCADVTEYHPNIKNWHIESYGKAEKFHPAKVHLHCSPGQTISSIKFASFGTPLGTCGNYKQGPCHSPTSYAILEKKCIGKQRCAVTVTNSIFGDPCSNVLKRLSVEAVCFATN 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1841 861 Pfam Beta-sandwich domain in beta galactosidase 363 434 IPR041392 -
Lal16g1841 861 Gene3D - 768 861 IPR043159 -
Lal16g1841 861 Pfam Galactose binding lectin domain 781 857 IPR000922 GO:0030246
Lal16g1841 861 SUPERFAMILY Galactose-binding domain-like 418 588 IPR008979 -
Lal16g1841 861 Gene3D Glycosidases 23 360 - -
Lal16g1841 861 SUPERFAMILY Galactose-binding domain-like 622 759 IPR008979 -
Lal16g1841 861 SUPERFAMILY (Trans)glycosidases 27 360 IPR017853 -
Lal16g1841 861 Pfam Glycosyl hydrolases family 35 35 119 IPR031330 -
Lal16g1841 861 Pfam Glycosyl hydrolases family 35 151 355 IPR031330 -
Lal16g1841 861 PANTHER BETA-GALACTOSIDASE 3 4 120 - -
Lal16g1841 861 PANTHER BETA-GALACTOSIDASE 3 151 853 - -
Lal16g1841 861 Gene3D - 606 756 - -
Lal16g1841 861 ProSiteProfiles SUEL-type lectin domain profile. 778 858 IPR000922 GO:0030246
Lal16g1841 861 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 197 209 IPR019801 GO:0004553|GO:0005975
Lal16g1841 861 PANTHER BETA-GALACTOSIDASE RELATED 4 120 IPR001944 GO:0004553|GO:0005975
Lal16g1841 861 PANTHER BETA-GALACTOSIDASE RELATED 151 853 IPR001944 GO:0004553|GO:0005975
Lal16g1841 861 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Lal16g1841 861 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Lal16g1841 861 PRINTS Glycosyl hydrolase family 35 signature 303 318 IPR001944 GO:0004553|GO:0005975
Lal16g1841 861 PRINTS Glycosyl hydrolase family 35 signature 323 339 IPR001944 GO:0004553|GO:0005975
Lal16g1841 861 PRINTS Glycosyl hydrolase family 35 signature 654 668 IPR001944 GO:0004553|GO:0005975
Lal16g1841 861 PRINTS Glycosyl hydrolase family 35 signature 681 697 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1841 Lal-Chr16 17484882 17493581 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0137 21 945645 951327 Lal16g1841 16 17484882 17493581 ECH
Lal8g0560 8 3878317 3884049 Lal16g1841 16 17484882 17493581 ECH
Lal10g0865 10 16170899 16178471 Lal16g1841 16 17484882 17493581 ECH
Lal16g1841 16 17484882 17493581 Lal16g1841 16 17484882 17493581 ECH