Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1362 ATGGCTGCAATAACAATACCCACTTTCCTCTTCTTTTTCTTCACTTTATCACTAGCTATGGACATGTCCATCATTAACTACCCCCACAACCATAACCAACCCAACCCACGAAACAACGATGAGGTTATGGCCATGTATGAGGAGTGGTTAGTGAAGCACCAAAAAGTGTATAATGGGTTGGAAGAGAAAGACAAAAGGTTTCAAGTTTTTAAGGATAACTTGGTGTTCATTGATGAACATAATGCTCAAAACAACACATATAAACTTGGGTTGAACAAGTTTGGTGATTTAACTAATGAGGAATATCGTGCCATGTATTTGGGTACGAGGAATGATCCTAAGAGAAGGGTCATGAATGCTAATAAAACTGGTCACCGTTATGCATATGAAGCCCGCGATAGGTTACCAGTGCATGTTGATTGGAGGTTGAAAGGTGCTGTTGCTCCAATCAAAGATCAGGGAGGTTGTGGAAGTTGTTGGGCATTCTCAACAGTGGCTGCAGTTGAAGGCATTAATAAAATAGTGACAGGGAAATTTGTCTCTCTATCAGAACAAGAACTTGTAGATTGTGACAGAATCTATGATGAAGGATGCAATGGTGGTCTCATGGACTATGCCTTTGAGTTCATCATCAATAATGGTGGCCTAGACACAGAGCAAGACTATCCATACAAGGGCATTGATAGTATTTGTGATCCAACTAGGAAGAATTCTAAGGTTGCAACCATTGATGGGTATGAAGATGTTCCACCATATAATGAAAAAGCTTTGAAGAAAGCAGTGTCTCATCAACCTGTGAGTGTTGCTATTGAAGCCTCTGGCAGAGCCTTCCAACACTATAACTCAGGTGTGTTTACTGGTAAATGTGGAACAGACTTGGACCATGGTGTGGTTGCAGTTGGATATGGAACTGAAAATGGTGTGGACTATTGGCTCGTAAGAAACTCGTGGGGCGGTGCGTGGGGCGAGGAGGGCTACATCAAGATACAGCGCAACGTCGTAGGCACATCGGCGGGGAAATGTGGAATCACAATGCAGGCCTCATACCCAGTGAAGTATGGCAAGAAATCAATCTTGAATTCAGCTAATGAAAGCAATGGAATGTATATTAGCAGTGTTTGA 1122 0.4225 MAAITIPTFLFFFFTLSLAMDMSIINYPHNHNQPNPRNNDEVMAMYEEWLVKHQKVYNGLEEKDKRFQVFKDNLVFIDEHNAQNNTYKLGLNKFGDLTNEEYRAMYLGTRNDPKRRVMNANKTGHRYAYEARDRLPVHVDWRLKGAVAPIKDQGGCGSCWAFSTVAAVEGINKIVTGKFVSLSEQELVDCDRIYDEGCNGGLMDYAFEFIINNGGLDTEQDYPYKGIDSICDPTRKNSKVATIDGYEDVPPYNEKALKKAVSHQPVSVAIEASGRAFQHYNSGVFTGKCGTDLDHGVVAVGYGTENGVDYWLVRNSWGGAWGEEGYIKIQRNVVGTSAGKCGITMQASYPVKYGKKSILNSANESNGMYISSV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1362 373 Pfam Papain family cysteine protease 135 351 IPR000668 GO:0006508|GO:0008234
Lal16g1362 373 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 293 303 IPR025660 -
Lal16g1362 373 Pfam Cathepsin propeptide inhibitor domain (I29) 46 102 IPR013201 -
Lal16g1362 373 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 359 - -
Lal16g1362 373 SMART Inhibitor_I29_2 46 102 IPR013201 -
Lal16g1362 373 SMART pept_c1 135 351 IPR000668 GO:0006508|GO:0008234
Lal16g1362 373 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 310 329 IPR025661 -
Lal16g1362 373 CDD Peptidase_C1A 136 350 IPR039417 -
Lal16g1362 373 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Lal16g1362 373 Gene3D Cysteine proteinases 25 353 - -
Lal16g1362 373 SUPERFAMILY Cysteine proteinases 39 351 IPR038765 -
Lal16g1362 373 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Lal16g1362 373 PRINTS Papain cysteine protease (C1) family signature 295 305 IPR000668 GO:0006508|GO:0008234
Lal16g1362 373 PRINTS Papain cysteine protease (C1) family signature 310 316 IPR000668 GO:0006508|GO:0008234
Lal16g1362 373 PANTHER CYSTEINE PROTEASE 31 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1362 Lal-Chr16 9994691 9997384 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0649 8 4584723 4588983 Lal16g1362 16 9994691 9997384 ECH
Lal10g0829 10 15922210 15926620 Lal16g1362 16 9994691 9997384 ECH
Lal25g0597 25 4510527 4515859 Lal16g1362 16 9994691 9997384 ECH
Lal16g1362 16 9994691 9997384 Lal16g1362 16 9994691 9997384 ECH