Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1017 ATGCATTTTCTTTCACCTACACTCTTGTCTTTCCTATTTTTCAGTGTTTTATGTCTAGTTCAAACCAAATCCATTATTGAACCATGTACCTCCTCATTCTCATGCCCCTCCCTTCTCTCTTACCTTTTACCTTGGGACTCAAAGCTCTCTGAAATTTCAACTCGTTTCAATGTAAATGTTTCTGATATCTTAGCCGCAAATTATGTCTATCCCATAACAAAACCAACATCATATGCAAATCAAATCCTAAGAGCCAAATCATTAGTGAAAGTTCCAATTGCATGCCCTTGTGTTGATGGTATAAGGAGGTCAATGTCAACAATTTACATTGTTCAACCATCTGATACACTTGCATCCGTATCAGATGTTTTTGGTGGATTAGTTAGTGGTGAACAAATTAAGAGTGTGAATAACATCAACCCTACAAACCCTTTGGTTAATGGAGGCAAAATTGTTATACCATTGCCATGTTCATGTTTAAACAATGTGAACAATGGTGGAAATGTGGTTTATATGTCTTATGTGGTGCAGAAAGGAGAGAGCCTAGGAAGCATCGCAATAGTTTTTGGTACTACTGTTTCAGACATGAAAACTGTGAATGGCCTTGCTCAAGCTGCAGTTGACCCTGGAGATATTCTCTCCGTCCCTATTTCAGCATGTTCATCAGCACCTCTGAATTGGTACAATGAGAGTCTTATAGTCCCAAATGGCTCATATGCTCTAACTGCCACCAACTGCATCAAATGCAATTGTGCACCATTGGATCTCAAGATGCAATGCAACCCTTCTGGATTGGATGTGCCCTGCTATAATTTGCGTTGCAAAGGGTCTAATCTTCTTATTGGGGATGTGCACATGGAACATTCAAAAACTGGTTGCAATGTGAGCCAGTGTGTTTACCGTGGCCATCGAGGTGGCAAAATTCTGAGTAGTATAATGAACTCATCTTACTCCGAGTGCCCAGTTAATTAA 972 0.3981 MHFLSPTLLSFLFFSVLCLVQTKSIIEPCTSSFSCPSLLSYLLPWDSKLSEISTRFNVNVSDILAANYVYPITKPTSYANQILRAKSLVKVPIACPCVDGIRRSMSTIYIVQPSDTLASVSDVFGGLVSGEQIKSVNNINPTNPLVNGGKIVIPLPCSCLNNVNNGGNVVYMSYVVQKGESLGSIAIVFGTTVSDMKTVNGLAQAAVDPGDILSVPISACSSAPLNWYNESLIVPNGSYALTATNCIKCNCAPLDLKMQCNPSGLDVPCYNLRCKGSNLLIGDVHMEHSKTGCNVSQCVYRGHRGGKILSSIMNSSYSECPVN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1017 323 CDD LysM 44 84 IPR018392 -
Lal16g1017 323 ProSiteProfiles LysM domain profile. 107 153 IPR018392 -
Lal16g1017 323 SUPERFAMILY LysM domain 172 216 IPR036779 -
Lal16g1017 323 Pfam LysM domain 49 71 IPR018392 -
Lal16g1017 323 Pfam LysM domain 109 154 IPR018392 -
Lal16g1017 323 Pfam LysM domain 174 216 IPR018392 -
Lal16g1017 323 CDD LysM 173 215 IPR018392 -
Lal16g1017 323 Gene3D LysM domain 164 223 IPR036779 -
Lal16g1017 323 Gene3D LysM domain 102 163 IPR036779 -
Lal16g1017 323 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 323 - -
Lal16g1017 323 SMART LysM_2 108 154 IPR018392 -
Lal16g1017 323 SMART LysM_2 173 216 IPR018392 -
Lal16g1017 323 ProSiteProfiles LysM domain profile. 172 215 IPR018392 -
Lal16g1017 323 CDD LysM 107 153 IPR018392 -
Lal16g1017 323 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 8 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1017 Lal-Chr16 6754048 6756412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1017 3 321 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.210 1.10e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1017 - - aprc:113855794 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1017 16 6754048 6756412 Lal16g1017 16 6754048 6756412 ECH