Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1011 ATGGCTGAATTCAAAGCAGATTTGCAAAGTTTCAGACCCATGTTTCCTTTATTAAACATTGATAGCATGGAATTTATTAATAATCAATTAGAAACAATGAACCCACATGTCATGGATAACTCAAATTTCAACTCTATGATGCACAACTTGATCCCTTTCTCTAGTGATGGTTCCACAGAACCTGAACTTCCAAGAAACTTGGAAGAAAACTTTTCAGGCCTTGTCTATTATGTCAATCACAATGCTGTTCCAGCTTCACTTTCCATTTCTTCATCAAAAAATGATACCCATGAAGATAAAAAGAGGAAAGCAACAATGGAACATTTCAGAAAAAACAGTTCTGTAAACTCTACTCATGCAGTTTCTGAAAATGATTGTGGAGGAGAGAAGAAGGTGAAAAGGGATGTAACCAAATACAAGGAATCAAAGGAAGTAGTTCATGTTAGAGCCAGAAGAGGCCAAGCTACTGATAATCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGATAAACTTAGGAGCTTGCAGAACATTGTCCCAGGATGTCACAAGACCATGGGTATGGCAATAATGTTTGATGAGATCATAAACTATGTGCAGTCCTTGAAGCATCAAGTAGAGTTCCTCTCTATGAAGCTTAGTGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAAATGCATTAGAAATAATACAGAGAGAAAGAGCATCCGAGGCAAAAGATCATGTGAGAGAAGGATATGGAGGAGTTTCCGACTTTCTACCAACTTGGCCTTAG 786 0.3766 MAEFKADLQSFRPMFPLLNIDSMEFINNQLETMNPHVMDNSNFNSMMHNLIPFSSDGSTEPELPRNLEENFSGLVYYVNHNAVPASLSISSSKNDTHEDKKRKATMEHFRKNSSVNSTHAVSENDCGGEKKVKRDVTKYKESKEVVHVRARRGQATDNHSLAERVRRGKINDKLRSLQNIVPGCHKTMGMAIMFDEIINYVQSLKHQVEFLSMKLSAASTFYDFNSETNALEIIQRERASEAKDHVREGYGGVSDFLPTWP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1011 261 Pfam Helix-loop-helix DNA-binding domain 158 186 IPR011598 GO:0046983
Lal16g1011 261 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 247 IPR024097 GO:0006355
Lal16g1011 261 Gene3D - 150 222 IPR036638 GO:0046983
Lal16g1011 261 PANTHER TRANSCRIPTION FACTOR BEE 1 2 247 - -
Lal16g1011 261 SMART finulus 160 210 IPR011598 GO:0046983
Lal16g1011 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 221 IPR036638 GO:0046983
Lal16g1011 261 MobiDBLite consensus disorder prediction 88 129 - -
Lal16g1011 261 MobiDBLite consensus disorder prediction 93 109 - -
Lal16g1011 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1011 Lal-Chr16 6723723 6725452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1011 1 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 40.000 2.18e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g1011 HLH 4.9e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1644 6 19205330 19207783 Lal16g1011 16 6723723 6725452 ECH
Lal6g0677 6 4446989 4448438 Lal16g1011 16 6723723 6725452 ECH
Lal18g1019 18 13195530 13197763 Lal16g1011 16 6723723 6725452 ECH
Lal16g1011 16 6723723 6725452 Lal16g1011 16 6723723 6725452 ECH