Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1000 ATGAGAATCCAACGGCTTCTTCTCTTCTTCGTGCTCTTTTTCCTAACTGCATTCTCAAACCTCAACGCCGCCGCCGCCGCCGATGACTGCGGCAGCTCCACCGATTTCATCCGTAGCAGTTGCAACAGCACACTCTACCCCGACATCTGCTTCACCTCCCTCTCTCGCTACGCCAATGCCGTACAACAAAACCCTGGCCAACTCGCTCGCGTCGCAATCTCCGTAACGCTCTCCAAGGTTCACCGAGTCGCCTCCTACGTCTCCAATCTCACGCGCGATGCCGACTATAGCGCTGATACACGCGCCGTGTCTGCAATCCATGACTGCTTCACCAACCTCGACGACGCCGTCGACCAAATCCGCGGATCTCTTAAGCAGATGCGGCAGATTGGCGCCGCCGGCGCCGGGTCGTTCCTGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCGCTCACTGATGAAGAAACTTGTACGGACGGGTTCCAAGATGTAGGTGACTGTAAGGTGAAGACGCAGGTATGTGATCGTGTCTCGAATGTGAAGAAGTTCACGAGTAATGCTTTGGCGCTCGTGAATAGTTACGCCAACAAAGGAATGCCTTGA 609 0.5517 MRIQRLLLFFVLFFLTAFSNLNAAAAADDCGSSTDFIRSSCNSTLYPDICFTSLSRYANAVQQNPGQLARVAISVTLSKVHRVASYVSNLTRDADYSADTRAVSAIHDCFTNLDDAVDQIRGSLKQMRQIGAAGAGSFLFQMSNVQTWMSAALTDEETCTDGFQDVGDCKVKTQVCDRVSNVKKFTSNALALVNSYANKGMP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1000 202 SMART PMEI_2 32 192 IPR006501 GO:0004857
Lal16g1000 202 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 196 IPR006501 GO:0004857
Lal16g1000 202 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 196 IPR035513 -
Lal16g1000 202 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 196 IPR035513 -
Lal16g1000 202 Pfam Plant invertase/pectin methylesterase inhibitor 35 192 IPR006501 GO:0004857
Lal16g1000 202 PANTHER PECTINESTERASE INHIBITOR-LIKE 6 199 - -
Lal16g1000 202 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 6 199 - -
Lal16g1000 202 CDD PMEI-like_3 39 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1000 Lal-Chr16 6634557 6635165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1000 34 192 Carbohydrate Esterase AT5G53370 29.814 7.04e-17 76.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1000 16 6634557 6635165 Lal16g1000 16 6634557 6635165 ECH
Lal16g1000 16 6634557 6635165 Lal15g0983 15 7843435 7851159 LSH