Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0919 ATGTTAGTCAATAATAGCTTATCTCATCCTTCATCAGACCCATTTTCATGCAGTGACAATGGTACTGCTGCTTCTAATAAAAGGAAGAGAAGACCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCACTGTCACCAAAGACATTACTTGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAAGTGCCGTGGAAGTTGCTGAAGAGGGAGACACCAGTGGTGAAAAAGAGAGTGTTTGTGTGCCCTGAACCTTCTTGCTTGCACCATGACCCTTGTCATGCTCTTGGTGATCTTGTTGGGATCAAGAAACACTTCAGAAGGAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCTCCAAAGGGTATGCAGTGCAATCTGATTACAAAGCACACCTCAAAACTTGTGGCACTAGAGGCCACTCTTGTGATTGTGGTCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAAAATGGGGAGTATAAGGCAAGAACCACAGCCACTACAAGGTGCATGCTTCTCTCGAACCGCTTCAAGCCCAAGCCCTTCAAGTGAAACCAATTTCAGCACTGCTCCATGGCCACCACCCTCTCTAGTCATACCAAAGAACCCTCTTGTTGTAATAGCAACACAAGACAGACAAACATTCTTGAACCATACACCTAGTACCACCTTTGTTGCAACTAATGCTGAAACCTCATCCAAGAATAGTATCAACAAACTCATCTACCCCAACTTGGATCTTCAACTCTCCACAGCAACACCAACAACTATTGATCATGTAGTTGTTACTCCAATATCTTTATCATCACCTAAGAATATAGATGGCAATGGATTGCAACTTTCCATTGGTTCATCTGAAATAAGTGACAAAAGTACTGAATCAAACAATAGTACTGAAGGTGCACATGCACGTGAGCAGGTCCACGAGGAGTTGAGGATAGCAATGGCGGAGAAGGCTTATGCTGAGGAAGCAAGGAAACAAGCAAAGGCGCAGATTGAACTAGCTGAACTTGAGTTCACAAACGCTAAGAGGATTCGACAACAAGCACATGTTGAAATGAACAAAGCTTATAGTTTGAAACAACATGCAATCAAACAAATCAATGCAACCATGCTTCAGATCACTTGCCATTCTTGCAAGCAACAGTTTCAAACGCCAAGTAATGAAGGTGGCCAATTAGAGAAGAATGGTAATGCAAAACATGTTACCAAAACCTCTAACTCTTAA 1305 0.4345 MLVNNSLSHPSSDPFSCSDNGTAASNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACKMGSIRQEPQPLQGACFSRTASSPSPSSETNFSTAPWPPPSLVIPKNPLVVIATQDRQTFLNHTPSTTFVATNAETSSKNSINKLIYPNLDLQLSTATPTTIDHVVVTPISLSSPKNIDGNGLQLSIGSSEISDKSTESNNSTEGAHAREQVHEELRIAMAEKAYAEEARKQAKAQIELAELEFTNAKRIRQQAHVEMNKAYSLKQHAIKQINATMLQITCHSCKQQFQTPSNEGGQLEKNGNAKHVTKTSNS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0919 434 MobiDBLite consensus disorder prediction 196 219 - -
Lal16g0919 434 Coils Coil 337 371 - -
Lal16g0919 434 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Lal16g0919 434 MobiDBLite consensus disorder prediction 306 330 - -
Lal16g0919 434 Gene3D Classic Zinc Finger 34 97 - -
Lal16g0919 434 MobiDBLite consensus disorder prediction 410 434 - -
Lal16g0919 434 MobiDBLite consensus disorder prediction 1 43 - -
Lal16g0919 434 PANTHER OS03G0310200 PROTEIN 1 418 IPR039288 GO:0009630
Lal16g0919 434 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g0919 434 MobiDBLite consensus disorder prediction 196 218 - -
Lal16g0919 434 MobiDBLite consensus disorder prediction 306 327 - -
Lal16g0919 434 Gene3D Classic Zinc Finger 118 193 - -
Lal16g0919 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Lal16g0919 434 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Lal16g0919 434 SUPERFAMILY beta-beta-alpha zinc fingers 53 79 IPR036236 -
Lal16g0919 434 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 418 - -
Lal16g0919 434 SMART c2h2final6 56 78 IPR013087 -
Lal16g0919 434 SMART c2h2final6 133 160 IPR013087 -
Lal16g0919 434 SMART c2h2final6 97 127 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0919 Lal-Chr16 6080436 6083912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0919 19 410 C2H2 Transcription Factor Family AT2G01940 55.474 3.47e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0919 zf-C2H2 0.0041 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0902 15 6826515 6830260 Lal16g0919 16 6080436 6083912 ECH
Lal16g0919 16 6080436 6083912 Lal16g0919 16 6080436 6083912 ECH
Lal16g0919 16 6080436 6083912 Lal15g0902 15 6826515 6830260 LSH
Lal16g0919 16 6080436 6083912 Lal8g0489 8 3319854 3323164 PCT
Lal16g0919 16 6080436 6083912 Lal25g0493 25 3460300 3463898 PCT
Lal8g0489 8 3319854 3323164 Lal16g0919 16 6080436 6083912 PCT
Lal25g0493 25 3460300 3463898 Lal16g0919 16 6080436 6083912 PCT