Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0808 ATGGAGGAGAAGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGAGTCTAGGTGGTCATATTAGGACTCATATGACTGAAGAAAGAAATAATAATAATAATGTTAATGCTAATCCTAATGCTGAATGTGATGATCTAAACTTGGATGCTGTGAGAATGAAGAAGAAGAGAGATTTATGGAGTGAAGTTGGTTATGGGCTTAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCAAATGCTACTTTGGAACAACAACAAGAGGATGAGAAGTTCTGCAAAGAATGTGGAAAAGGCTTTCCATCATTGAAAGCTCTTTGTGGCCACATGGCTTGTCACTCTGAGAAACAGAAATTGGTTCTGGATAATCAATCTGATACTGAGGAGAATTGTGATATTCTGAAGCATTCAAAGAGACCCAAGAGAATGAGGTTCAAAACCCTTAGCCTTAGCAATAATCATACATATTCTTCTTCTGTGTCAGAGGTGGAGCAGGAGCAAGAAGAGGTTGCAATGTGTTTAATGTTGTTGTCTAAAGATTCTAGTCATAAGGGTCCTTTTGGTTTTGTTACTGAGTCTTCTGAAAACAACTCGGTTGTTGTAGAGGCAGCAAAATCTTCATCTGTTGATATGAGGGTAGGTACAAAAAATGGTAACAAGTTTGTCTCTAATGGTTATGATCTTGTAGAGAAGGTTTCAAACGATGAATTTAAGTCTGAGCTTGAGGATTACAATGTTGAATCAAGGAAGATGCTGAGCATGAATAAAGGGAGAAGCAAATGCGCTGTAACTGTACTCAAGAAGAAATCAGTGATGGAGAATTTGGATTATGATAGAAATGATGGAACTACAGGGAAGTTTGATTCTAGAAAAACAACCAACTATGATTATTTTGGTCATAGCAAGAAGACAGAAAACATGTTTGATAGTGATGAAATCTATGAGAAAAAAGGATGGAATTATGAGAGTGATGAAAACAGTTCAGACACTGATTCTTTTCCTGCTCCAAAGTATCATAGCAGTAAGGTTTTGAATGGAAAGAAGTGTAACAAGGCCAAGAAGAAGTTGAAGTCAAAGAAAAGCAGAGAACATGAGTGTCCAATATGCTACAAGATTTTCAAGTCAGGTCAAGCCTTAGGAGGTCATAAAAGATCCCATTTTGTTGGAGGTTCTGAAGAAAACACTGTGGTAATCAACAAAGGTCCTTGCCTTATTGATCTCAATCTACCAGCTCCTGTTGATGAATAG 1263 0.3761 MEEKKFVCKYCSKRFPCGKSLGGHIRTHMTEERNNNNNVNANPNAECDDLNLDAVRMKKKRDLWSEVGYGLRENPKKTMRFVHSNATLEQQQEDEKFCKECGKGFPSLKALCGHMACHSEKQKLVLDNQSDTEENCDILKHSKRPKRMRFKTLSLSNNHTYSSSVSEVEQEQEEVAMCLMLLSKDSSHKGPFGFVTESSENNSVVVEAAKSSSVDMRVGTKNGNKFVSNGYDLVEKVSNDEFKSELEDYNVESRKMLSMNKGRSKCAVTVLKKKSVMENLDYDRNDGTTGKFDSRKTTNYDYFGHSKKTENMFDSDEIYEKKGWNYESDENSSDTDSFPAPKYHSSKVLNGKKCNKAKKKLKSKKSREHECPICYKIFKSGQALGGHKRSHFVGGSEENTVVINKGPCLIDLNLPAPVDE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0808 420 Gene3D Classic Zinc Finger 1 62 - -
Lal16g0808 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lal16g0808 420 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lal16g0808 420 ProSitePatterns Zinc finger C2H2 type domain signature. 371 391 IPR013087 -
Lal16g0808 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 369 391 IPR013087 -
Lal16g0808 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Lal16g0808 420 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Lal16g0808 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 420 - -
Lal16g0808 420 Pfam C2H2-type zinc finger 98 120 - -
Lal16g0808 420 Pfam C2H2-type zinc finger 369 391 - -
Lal16g0808 420 Pfam C2H2-type zinc finger 6 30 - -
Lal16g0808 420 SMART c2h2final6 369 391 IPR013087 -
Lal16g0808 420 SMART c2h2final6 96 118 IPR013087 -
Lal16g0808 420 SMART c2h2final6 6 28 IPR013087 -
Lal16g0808 420 SUPERFAMILY beta-beta-alpha zinc fingers 4 118 IPR036236 -
Lal16g0808 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0808 Lal-Chr16 5232494 5233756 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0808 zf-C2H2_6 5e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0808 16 5232494 5233756 Lal16g0808 16 5232494 5233756 ECH