Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0788 ATGGAGTTTGAGGTTATAGCTGTTGGCGGCATAAACAACTGTTTCGTATCTCTTCCTCTTCCTCTTATTCAATCTCTCCAATTCACGCTCTCTTCTCCACTCTCTCTTGAGCTTCGTTCTCCTTCTCACCCTCCACACCTCTGGTTCGTTGCTTGGTCCGGTGCCACCTCTCATTCTTCTTCCACCATTGAGGTTTCGGCACAATTTGCAGAATGCATATCGTTGCCGAACCATGCTACAGTTCAAGTGAAAGTTGCTTCACACGTGCCACATGCTTCTATGGTTACTATTGAACCTCACACTGAAGATGATTGGGAAATTTTGGAGCTCAATGCTGATCAAGCTGAGGCTGCAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATCACATTCCAGGTGGCTTCTGTTTTTCCGAAGAATGCCGTGGTGCAACTCATGCCAGGAACTGAAGTTGCAGTTGCGCCAAAGAGGCGCAAAAGAATTTTGGATTCAGCAGGAGATTCACATCCAGACTCCTACGATAAAGAACATACTGCAAAGATGCTGCTCCGGATACAAGATCCGAAGGGGTTATGTCATACCAATACTCATGTCAAAGATGTTGAGATTGATATAGAGCTTACTTCTGTTGCTTTTGTTCACCCTGAAACAGCCAAGCGCTTCTCATTTAACATGCTTCAATTGGTTTCCATAGCTCCAAGAGTAATCAAGGAGAATGTTAATAATTCCAGAACCAATATTATGAAAGCAAGAGGCGGGTCAGCTGCCAACGGAGTTGAGAATGGAAATTTATCTGATAAGAAAGATCATCAACAAGTAACTGTTCATCTATTGTTTTCAGAGTCTGTGGCTGAAGGACATGTGATGGTAGCTAAGTCTCTTTGCCTTTATTTGAGAGCTGGCCTGCATTCATGGGTTTACTTGAAGGCATGCGATATTATTTTGGAAAAGAGTTTTCCTTCCATCTCTCTTTGTCCTTGCCAATTGAAACCATCCAAGCATGATAGTGTTGAGAAAGATGGTCTAGAAGTTATTCATGGCCACAAAAATCACATTGATGAAAAATTGCATGCAAAAGCTACGTCAGGTGTCTCTGTGGATACTATGGATTGGTCGATCCACGGTGAAGTTGTTGCAGCACTGTCTGATGAATCCAATTATAAAGCTGATAAAGAGGCTGCAAATCAGTCTCAGAATAAAAAAGGATTACAGAGTCTTGTACGACTATGGTATATTGCACAGCTTGAGGCAATAAATTCCATTATGGGTGTGGAGGTTAATTCATTGATTATGAGTAGTAAAACCTTGCTTCATTTCAAGTTAAGCTGTTACAAGCTTGGGAGTGACGGGAAGGTTCGGCTAGTTTCTAATTCTTCAGAAAATAGTGGCAAGACAGCTGAATTGTTATTCATTTTGGCCTTTGGTGAAGAATATCCACATCATGGGAAGCTTAATGCATATGAAGTTGCTCTTGGTGGAAGTCTCAATAACATAAATGTTGGGGATCTGGAGCTTTTTGAAAGGGTGAAATTGGGTGATCCTGTAATTATTCATCATTCTATTGAAGAGAGAGCCTCTGAAGAACACATTAGTTCAGATGTATCTTCCCTTGGCTGGATGGAGACAACTGCTTCTGATGTTACCAATAGGATGTCCATATTGTTGTCATCAGCATCTGGTCTGTGGTTTGGCTCATACAACTTTCCACTCCCTGGACATGTTCTAATATATGGACCTCCAGGCTCTGGGAAAACTTTATTGGCAAGGACTGTGGCAAAAATTCTAGAGGAGCGTGAAGACATCTTAGCACATATAGTTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATCATTCGCCAGGAACTCGCAGACCATGTAACTGAAGCTTTAAACCATGCACCTTCTATTGTCATCTTTGATGATCTTGATAGCATAATTTCCACCCCTGATTCCGATGGGTCTCAGCCTTCAATGTCAATTGCTGGGCTAACAGATTTTCTGGTTGATATCATTGATGAATATAGGGAGAAGAGGAAAAAATCGTGTGGATTCGGACCGATTGCCCTCATAGCTTCCATACAGTCTCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGGCGGTTTGACTTTCACATACAGCTGCCTGCTCCTGCAGCTTCAGAGCGTAGGGCTATGTTGAAGCATGAAATACAAAGGCGTCACTTGCAATGTGGTGATGATATCCTGCTTGATGTGGCTGTCAAATGTGACGGTTATGATGGCTATGATATGGAAATATTAGTTGATCGAGCTGTTCATGCTGCTGTTCGCCGTTTTTTGCCATCTAATGCCGCTGTTTATGAGCATGAGTGTCCTACTTTACTTGGGGAGGATTTCTCTCAGGCCATGCATGATTTTCTTCCAGTTGCAATGCGCGACATTACAAAAGCTGCTTCTGATGGTGGCCGTTCTGGATGGGAGGATGTGGGTGGTCTTACTGACATTCAAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCAAAAGCACCTTTGAGGTTGCGGTCAAACGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATTGTTGGTGCTGCTGCTGCTGCTTCTTCACTACGATTCATATCAGTGAAAGGTCCTGAACTGTTGAACAAGTACATTGGTGCTTCTGAACAAGCTGTTCGGGATATATTCTCTAAAGCAGCCGCTGCAGCCCCATGCCTACTTTTTTTTGATGAATTTGATTCCATTGCTCCTAAGAGAGGTCACGATAATACTGGAGTAACCGATCGTGTTGTTAATCAATTTCTGACAGAGTTAGATGGTGTCGAAATTTTAACTGGTGTTTTTGTGTTTGCTGCAACCAGCAGACCAGATTTACTTGATGCAGCGCTGTTGAGACCTGGTAGGTTGGATCGACTTCTATTCTGCGATTTCCCATCTTCGAATGAGAGATTGGAAATTTTGACTGTACTTTCTAGAAAGTTACCGATGGCGAATGATATTGATTTGGCCACAATTGCTAATATGACTGAGGGATTCAGTGGAGCTGACCTCCAAGCTCTCCTCTCAGATGCACAACTCGCAGCAGTCCATGATGTTCTGGAAAATATCGACGCTACTGGGCCCAAGACAACACCAATTATTACAGATGCTCATATGAAGTTCACTGCCTCCAAAGCTAGACCATCTGTTTCAGAAGAAGAGAAAAGAAGACTCTACAATATTTATCATCAGTTCCTGGATTCGAAGAGATCAGCTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3384 0.4285 MEFEVIAVGGINNCFVSLPLPLIQSLQFTLSSPLSLELRSPSHPPHLWFVAWSGATSHSSSTIEVSAQFAECISLPNHATVQVKVASHVPHASMVTIEPHTEDDWEILELNADQAEAAILNQVRIVHEGMRFPLWLHGHTVITFQVASVFPKNAVVQLMPGTEVAVAPKRRKRILDSAGDSHPDSYDKEHTAKMLLRIQDPKGLCHTNTHVKDVEIDIELTSVAFVHPETAKRFSFNMLQLVSIAPRVIKENVNNSRTNIMKARGGSAANGVENGNLSDKKDHQQVTVHLLFSESVAEGHVMVAKSLCLYLRAGLHSWVYLKACDIILEKSFPSISLCPCQLKPSKHDSVEKDGLEVIHGHKNHIDEKLHAKATSGVSVDTMDWSIHGEVVAALSDESNYKADKEAANQSQNKKGLQSLVRLWYIAQLEAINSIMGVEVNSLIMSSKTLLHFKLSCYKLGSDGKVRLVSNSSENSGKTAELLFILAFGEEYPHHGKLNAYEVALGGSLNNINVGDLELFERVKLGDPVIIHHSIEERASEEHISSDVSSLGWMETTASDVTNRMSILLSSASGLWFGSYNFPLPGHVLIYGPPGSGKTLLARTVAKILEEREDILAHIVFVSCSKLALEKVPIIRQELADHVTEALNHAPSIVIFDDLDSIISTPDSDGSQPSMSIAGLTDFLVDIIDEYREKRKKSCGFGPIALIASIQSLEKIPQSLSSSGRFDFHIQLPAPAASERRAMLKHEIQRRHLQCGDDILLDVAVKCDGYDGYDMEILVDRAVHAAVRRFLPSNAAVYEHECPTLLGEDFSQAMHDFLPVAMRDITKAASDGGRSGWEDVGGLTDIQNAIKEMIELPSKFPKTFAKAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSSNERLEILTVLSRKLPMANDIDLATIANMTEGFSGADLQALLSDAQLAAVHDVLENIDATGPKTTPIITDAHMKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSAAAQSRDAKGKRATLA 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0788 1127 Pfam AAA+ lid domain 1026 1064 IPR041569 -
Lal16g0788 1127 Pfam ATPase family associated with various cellular activities (AAA) 874 1001 IPR003959 GO:0005524|GO:0016887
Lal16g0788 1127 Pfam ATPase family associated with various cellular activities (AAA) 587 732 IPR003959 GO:0005524|GO:0016887
Lal16g0788 1127 Gene3D - 89 169 - -
Lal16g0788 1127 CDD AAA 866 1003 - -
Lal16g0788 1127 Gene3D - 835 1097 IPR027417 -
Lal16g0788 1127 Gene3D - 531 734 IPR027417 -
Lal16g0788 1127 ProSitePatterns AAA-protein family signature. 974 992 IPR003960 GO:0005524|GO:0016887
Lal16g0788 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 836 1101 IPR027417 -
Lal16g0788 1127 SUPERFAMILY ADC-like 6 86 IPR009010 -
Lal16g0788 1127 Pfam Peroxisome biogenesis factor 1, N-terminal 94 168 IPR015342 GO:0005524|GO:0005777|GO:0007031
Lal16g0788 1127 PANTHER - 3 1124 - -
Lal16g0788 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 812 IPR027417 -
Lal16g0788 1127 SUPERFAMILY Cdc48 domain 2-like 90 168 IPR029067 -
Lal16g0788 1127 CDD AAA 584 732 - -
Lal16g0788 1127 SMART AAA_5 870 1006 IPR003593 -
Lal16g0788 1127 SMART AAA_5 583 735 IPR003593 -
Lal16g0788 1127 Gene3D - 735 815 - -
Lal16g0788 1127 Gene3D - 1005 1084 - -
Lal16g0788 1127 PANTHER AAA-FAMILY ATPASE 3 1124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0788 Lal-Chr16 5113346 5124620 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0788 16 5113346 5124620 Lal16g0788 16 5113346 5124620 ECH