Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0784 ATGGGTGACAACGACAACCAGAAATCTTTGATCTACGCGTTCGTGTCTCGAGGAACCGTGATTCTCGCTGAGTACACAGAATTCAGTGGCAACTTCAATTCCATCGCGTTTCAGTGCCTTCAGAAACTTCCTTCTACTAACAACAAGTTCACTTATAACTGTGACGCTCACACTTTCAATTACCTCGTCGACAATGGCTTCACATATTGTGTTGTTGCAGATGAATTGGTTGGAAGACAGGTGCCTTTGGCTTTTCTAGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGAAAGGCAGCTACCGCTGCACCCAACAGTCTTAATAAGGAATTTGGGCCAAAATTGAAGGAACATATGCAGTACTGTGTTAGTCATCCTGAAGAGATAAGCAAGCTTGCAAAGGTCAAAGCTCAGGTTTCTGAAGTCAAAGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGAGAAAAGATAGAGCTTCTGGTTGACAAGAGTGAAAACCTTCATCACCAGGCACAAGACTTCAAAAATTCCGGGACCCAACTCCGTAGAAAAATGTGGCTGAAAAACATGAAGATGAAGTTGATCGTATTGGCTGTTGTGATAATCCTGATCCTCATCATAGTCCTTTCTGTCTGCCATGGGTTCAACTGTGGAAAATAA 678 0.4322 MGDNDNQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPSTNNKFTYNCDAHTFNYLVDNGFTYCVVADELVGRQVPLAFLERVKDDFVAKYGGGKAATAAPNSLNKEFGPKLKEHMQYCVSHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKSENLHHQAQDFKNSGTQLRRKMWLKNMKMKLIVLAVVIILILIIVLSVCHGFNCGK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0784 225 SMART Longin_2 35 117 IPR010908 -
Lal16g0784 225 SUPERFAMILY SNARE fusion complex 129 196 - -
Lal16g0784 225 Pfam Regulated-SNARE-like domain 38 115 IPR010908 -
Lal16g0784 225 CDD Longin 11 125 IPR010908 -
Lal16g0784 225 Pfam Synaptobrevin 133 219 IPR042855 -
Lal16g0784 225 Gene3D - 132 218 - -
Lal16g0784 225 PRINTS Synaptobrevin signature 139 158 IPR001388 GO:0016021|GO:0016192
Lal16g0784 225 PRINTS Synaptobrevin signature 159 178 IPR001388 GO:0016021|GO:0016192
Lal16g0784 225 PRINTS Synaptobrevin signature 195 214 IPR001388 GO:0016021|GO:0016192
Lal16g0784 225 Gene3D Longin domain 1 131 - -
Lal16g0784 225 SUPERFAMILY SNARE-like 10 125 IPR011012 -
Lal16g0784 225 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 7 174 - -
Lal16g0784 225 ProSiteProfiles Longin domain profile. 14 118 IPR010908 -
Lal16g0784 225 PANTHER SNARE PROTEINS 7 174 - -
Lal16g0784 225 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 134 194 IPR042855 -
Lal16g0784 225 CDD R-SNARE 134 192 - -
Lal16g0784 225 ProSitePatterns Synaptobrevin signature. 152 171 IPR001388 GO:0016021|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0784 Lal-Chr16 5074481 5078139 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0784 16 5074481 5078139 Lal16g0784 16 5074481 5078139 ECH
Lal16g0784 16 5074481 5078139 Lal23g0848 23 10877019 10880865 LSH