Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0770 ATGTGGAGTAAGTTTAAAAAACTTATTCTTGGAGCAAGTGGTGTTGGAAAACTTGCAGCAAGAAAGAAAGAAAAAGAAAGAAGACAGCAGTGGAAGAAAAGAAAGAAAACCAGAAGAGAAAATGAGGTGTATTTTTCTTCTTATTTAGCAGATGAAGGGACAAGTAATACAGGATTCAATGTGCAGTCCCAAAAATGCACAAGGTGGAGTCCAACACCAGTTCAGTTACTAGTCCTTGAGGAATTGTATAGGCAGGGTACAAAGACACCATCATCTGAACAAATTCAGCAAATAGCTTCACAGCTACGCAGGTTCGGCAAGATTGAAGGCAAAAATGTGTTCTACTGGTTCCAGAATCACAAGGCTAGAGAGCGTCAGAAGCGTTGTCGCTTGGAAATAGAGGAAACTGCTTCTACTGAAGGGTTGAAAGGGACATGTTATGAAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCTAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTTGATATAGCAGAAAAGGGATCAAATTGGTGGACTCAATTTGAAGAGAGAGGTATACATGTTTTGAGCACTGGCATAGGAGAAAAGCCAGCTAAGTGTCCAAATATGGAAAAGCCTTGCTTTGCACCAATTATCACAGCATCAACTACTTTTCTACCAGCACAAACAATACTTAAAACACAACTTTTAACACCTCCAAATTATAATTTACCAGTGGTACTCAACAGAGAAAGTTTCAACTATTATGATGATGAAGAAAATCCCTATCCTAAGACCCTTGAACTTTTTCCACTCAAGAGGGATGACCAAGATAGCATTTCTCATACTGAGTGGAAATCTAGATTCTATGCTGCCAATGCTGCTTCTATGGACACTGAAATCACCTCCAAGTTTTTTGAGTTTCTTCTTTTAAGAAACTGA 930 0.3935 MWSKFKKLILGASGVGKLAARKKEKERRQQWKKRKKTRRENEVYFSSYLADEGTSNTGFNVQSQKCTRWSPTPVQLLVLEELYRQGTKTPSSEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKRCRLEIEETASTEGLKGTCYEVKETKKWASTSNCSGHAEESAALDIAEKGSNWWTQFEERGIHVLSTGIGEKPAKCPNMEKPCFAPIITASTTFLPAQTILKTQLLTPPNYNLPVVLNRESFNYYDDEENPYPKTLELFPLKRDDQDSISHTEWKSRFYAANAASMDTEITSKFFEFLLLRN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0770 309 CDD homeodomain 67 128 IPR001356 GO:0003677
Lal16g0770 309 Gene3D - 60 126 - -
Lal16g0770 309 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 304 IPR044555 GO:0003700|GO:0099402
Lal16g0770 309 SUPERFAMILY Homeodomain-like 60 127 IPR009057 -
Lal16g0770 309 Pfam Homeodomain 65 126 IPR001356 GO:0003677
Lal16g0770 309 ProSiteProfiles 'Homeobox' domain profile. 62 127 IPR001356 GO:0003677
Lal16g0770 309 SMART HOX_1 64 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0770 Lal-Chr16 4980680 4983441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0770 67 169 Wox Gene Family AT3G18010 52.586 7.95e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal16g0770 Homeodomain 2.9e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0770 16 4980680 4983441 Lal16g0770 16 4980680 4983441 ECH
Lal16g0770 16 4980680 4983441 Lal15g0737 15 5177038 5179459 LSH
Lal16g0770 16 4980680 4983441 Lal23g0865 23 10963192 10966668 LSH