Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0769 ATGGCGAAACGTTTGATTCCTAGTCTGAACCGTGTTTTAATCGAGAAAATTGTCCCTCCTTCCAAAACTTCCGCCGGAATTCTCCTTCCTGAGAAATCCTCCCAGCTTAATTCAGGGAAGGTGATAGCGGTTGGACCCGGAGCACGGGACAAAGCAGGGAATTTGATTCCGGTGTCCGTGAAGGAGGGCGACACCGTGCTATTGCCGGAGTATGGTGGCAGCCAAATCAAGCTCAATGACAAAGAGTTCATTTTGTATAGGGATGAGGATATTTTGGGCACTCTACATGATTGA 294 0.4796 MAKRLIPSLNRVLIEKIVPPSKTSAGILLPEKSSQLNSGKVIAVGPGARDKAGNLIPVSVKEGDTVLLPEYGGSQIKLNDKEFILYRDEDILGTLHD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0769 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal16g0769 97 Pfam Chaperonin 10 Kd subunit 6 94 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal16g0769 97 PANTHER GROES-LIKE FAMILY PROTEIN 1 97 - -
Lal16g0769 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 97 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal16g0769 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Lal16g0769 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Lal16g0769 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal16g0769 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal16g0769 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal16g0769 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal16g0769 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0769 Lal-Chr16 4977858 4978836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0769 3 96 Calmodulin-binding Proteins AT5G20720 38.542 5.15e-12 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0769 16 4977858 4978836 Lal16g0769 16 4977858 4978836 ECH
Lal16g0769 16 4977858 4978836 Lal23g0867 23 10979932 10982643 LSH