Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0764 ATGGCGGTTTTACCTAGAAGCTCCACCAGCTTGGAATTGACCATATCTGTCCCAGGCTTTGGTTCTACACCAACTTTCCTTCACTCTTCATCTGTAAAAGAGTTGGACATAAACCAAGTACCCTCAGAAGAAGAAGAATGGGTTGTATCAAACATGGAAGACGAAGAAGAACACAGCAATGGAGACACTCCCCGCAAGAAACTTCGCCTCACAAAGGAACAGTCCCGTCTCCTTGAAGAAAGCTTTACATTAAACCACACTTTAAACCCAAACCAGAAAGAGTGTTTGGCAACACAGCTGAAGCTGCGACCAAGGCAAGTAGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGACGGAATGCGAGTACCTGAAGAGGTGGTTTGGGACACTGACAGAGCAGAATCGAAGGCTTCATAGAGAGGTGGAAGAACTTAGGGCAATGAAAGTGGGTCCACCAACTGTGATATCTCCTCATAGTTGTGAACCATTACCAGCATCAACACTAACCATGTGTCCACGCTGTGAGCGTGTCACCACCAATGTTGCCACCACTTTGTCTTCTAAAGTTCTCACGCCTACACTTCAGTCCCATCAACCTTCTGCGGCTTGTTGA 633 0.4739 MAVLPRSSTSLELTISVPGFGSTPTFLHSSSVKELDINQVPSEEEEWVVSNMEDEEEHSNGDTPRKKLRLTKEQSRLLEESFTLNHTLNPNQKECLATQLKLRPRQVEVWFQNRRARSKLKQTETECEYLKRWFGTLTEQNRRLHREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTNVATTLSSKVLTPTLQSHQPSAAC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0764 210 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Lal16g0764 210 SUPERFAMILY Homeodomain-like 52 122 IPR009057 -
Lal16g0764 210 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Lal16g0764 210 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Lal16g0764 210 Gene3D - 57 128 - -
Lal16g0764 210 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Lal16g0764 210 Coils Coil 134 154 - -
Lal16g0764 210 CDD homeodomain 64 122 IPR001356 GO:0003677
Lal16g0764 210 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Lal16g0764 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 196 - -
Lal16g0764 210 SMART HOX_1 63 125 IPR001356 GO:0003677
Lal16g0764 210 PANTHER - 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0764 Lal-Chr16 4934778 4937325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0764 32 188 Homeobox Transcription Factor Family AT1G70920 61.491 1.97e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal16g0764 Homeodomain 3.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0764 16 4934778 4937325 Lal16g0764 16 4934778 4937325 ECH