Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0757 ATGATGGAGTCTGAATTGCCATCTTATTACAATGTTCTTGGTGTCACTTCAAATTCTAAAATTGAAGAAATAAGGCGTGCTTATAGGAAGCTTGCAATGCAGTGGCATCCAGATAGGTGGACAAAAACGCCTTCTTTACTTTCTGAATCCAACCACAAATTTCAGCAAATTCAAGAAGCCTATTCAGTGTTATCAGACCCCAAGAAAAGAACTCTGTACGACGTAGGCTTGTATGATCCTCAAGAGGAAGAGAATGAGGGCTTTTCTGATTTTGTGGAAGAAATGGCATCCCTTATGGCTCAAGTTAGGAATGAGGAAAAGATTTATGGGTGGGAGGAGTTGCAGTCTATGTTCATGGAAATGGCTAAGGAATTCGAGTATCCTTCAATGTATGGCGAGGGACCTTCGGTGGTTGATGAATCTGGGTGTTCATCAAAGAGGATGCATTTTGAAACAAACTTAATGGACAATAAAGGGCCACCTTTTCAAGTTCCTACTTTCAACTTCTATGAAACAAGAGATTATTGCAATTAA 534 0.397 MMESELPSYYNVLGVTSNSKIEEIRRAYRKLAMQWHPDRWTKTPSLLSESNHKFQQIQEAYSVLSDPKKRTLYDVGLYDPQEEENEGFSDFVEEMASLMAQVRNEEKIYGWEELQSMFMEMAKEFEYPSMYGEGPSVVDESGCSSKRMHFETNLMDNKGPPFQVPTFNFYETRDYCN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0757 177 SMART dnaj_3 7 69 IPR001623 -
Lal16g0757 177 CDD DnaJ 9 66 IPR001623 -
Lal16g0757 177 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Lal16g0757 177 PANTHER PUTATIVE, EXPRESSED-RELATED 2 176 - -
Lal16g0757 177 SUPERFAMILY Chaperone J-domain 5 80 IPR036869 -
Lal16g0757 177 Gene3D DnaJ domain 7 126 IPR036869 -
Lal16g0757 177 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 176 - -
Lal16g0757 177 Pfam DnaJ domain 9 74 IPR001623 -
Lal16g0757 177 PRINTS DnaJ domain signature 10 28 IPR001623 -
Lal16g0757 177 PRINTS DnaJ domain signature 28 43 IPR001623 -
Lal16g0757 177 PRINTS DnaJ domain signature 49 69 IPR001623 -
Lal16g0757 177 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0757 Lal-Chr16 4880764 4882229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0757 4 74 C2H2 Transcription Factor Family AT1G74250 47.222 6.65e-15 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0757 16 4880764 4882229 Lal16g0757 16 4880764 4882229 ECH
Lal16g0757 16 4880764 4882229 Lal15g0723 15 5069095 5071386 LSH