Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0754 ATGGCCGGCGAAGTCCCCGCCGGTAACTACTCGCCGGAGGAGATTCTATCTCTCATTCACGACATAGCCGGAATGTGCTCCGGCGATTCATCCACGGCCAACGTCATTGCCGCCGATGCCATGTTCAGGAAAGACTGTACCGATCTGGTTCGCCGGATCTCACTCCTCACCTACTTGTTCGAGGAGATTAAAGAATTGGCAAAGGTTGTTGATTCTGCTGCTACTTCTTCTACTATTGCTGATACTGTTGATTCTGATTCGTGGTCCTCTGATCTGGTTCTTGCTCTTCACTCTGCCAAACGTTTGCTCTCAATAGCTATGAACTTGAGTTCCAATAGCTCTTCTGATGGAGCTGCCAAGACCATCACCTATCAATTTCAGTGTGTGACATGGAAATTAGAAAAAGTATTAAGCAACTTACCATATGGCAATTTGGATATCTCCGAGGAAGTCAGAGAACAGGTGGACTTGGTTAGAACACAATTAAGACGAGCCACAGATAAATATGGGTTTATGATTTCAAAAATGCCATCTCATGAATTATCCCAGCCCATGGATCAAGAGTTTGCTCAGGTTCTTGGCAAATCTGTGAATGGATTGCTTAAACAACAAAGCTGTCCTGAAAAACTATCAGAATTGAACAGAATTCCTAAAAACATTGGTGGGAAAGGCTGCAGTACATTTCGGGCATTTTCTCTCTTGGAAAGATCAAGGAGCATCCCTGTCTGCACTGATGTTTCTTCATCAAATGTTACTGATCCTGAAAGTCAAGAAAAATCTGAGAGTAAAAGTCAATCCGAAGATAAAAAACCGGAAGCAATTGTTATCCCTGAAGATTTTCTTTGCCCAATATCCCTGGAACTAATGAGAGATCCTGTTATTGTGGCCACTGGCCAGACATATGAGAGATCTTACATACAGAGGTGGGTAGATTGTGGAAATACAACGTGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACTCCAAATTATGTGTTAAGGAGCCTTATTAGTCAGTGGTGTATAGAGAACAATATTGAGCAGCCAACAGGACTAACTAATGGCAAAATTAAAAAGAGCGATGGATCGTTCAGAGATGTTACAGGTGACATAGAAGCAATCGAAGCTTTGGTCCGGAAGCTCTCGAGCCGGTCCATTGAGGAGCGTAGAGCAGCAGTTACTGAAATTCGATCACTGTCCAAACGAAGCACAGACAACAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTTTAACATCAGAAGATGTATTAACGCAAGACAATGCAGTTACTTCCATTCTCAACCTTTCTATATATGAAAGTAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATCGTTCAAGTCCTGAGAGCTGGAACCATGGAAGCGAGGGAAAACGCAGCCGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAGATAATAATTGGTGCCTCAGGAGCTATTCCCGCATTGGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATAAGAGCAGGGATTATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCCAATCAATGGTTGATGAAGCCCTAACAATAATGTCAGTTCTTGCAAGCCACCAAGAGGCAAAGGTTGCTATAGTAAAAGCCAGCACAATACCAGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGCAACAAAGAGAATGCAGTTGCCATTTTACTTGCCTTGTGCAAGAGGGATACCGACAATCTTGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTTTCTGACCTTGCTAGGAGTGGTACAGAGAGGGCCAAACGCAAGGCTACTTCATTATTGGAGCATCTTCGTAAGTTACAGCAGATTTGA 1968 0.4329 MAGEVPAGNYSPEEILSLIHDIAGMCSGDSSTANVIAADAMFRKDCTDLVRRISLLTYLFEEIKELAKVVDSAATSSTIADTVDSDSWSSDLVLALHSAKRLLSIAMNLSSNSSSDGAAKTITYQFQCVTWKLEKVLSNLPYGNLDISEEVREQVDLVRTQLRRATDKYGFMISKMPSHELSQPMDQEFAQVLGKSVNGLLKQQSCPEKLSELNRIPKNIGGKGCSTFRAFSLLERSRSIPVCTDVSSSNVTDPESQEKSESKSQSEDKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWVDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIENNIEQPTGLTNGKIKKSDGSFRDVTGDIEAIEALVRKLSSRSIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYESNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSQSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAVAILLALCKRDTDNLACISRLGAVIPLSDLARSGTERAKRKATSLLEHLRKLQQI 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0754 655 SUPERFAMILY ARM repeat 373 649 IPR016024 -
Lal16g0754 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Lal16g0754 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Lal16g0754 655 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Lal16g0754 655 Gene3D - 453 553 IPR011989 -
Lal16g0754 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 540 IPR000225 GO:0005515
Lal16g0754 655 Gene3D - 554 654 IPR011989 -
Lal16g0754 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Lal16g0754 655 Pfam U-box domain 276 347 IPR003613 GO:0004842|GO:0016567
Lal16g0754 655 Coils Coil 148 168 - -
Lal16g0754 655 CDD RING-Ubox_PUB 280 322 IPR045210 -
Lal16g0754 655 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 18 652 - -
Lal16g0754 655 SMART arm_5 487 527 IPR000225 GO:0005515
Lal16g0754 655 SMART arm_5 446 486 IPR000225 GO:0005515
Lal16g0754 655 SMART arm_5 569 609 IPR000225 GO:0005515
Lal16g0754 655 SMART arm_5 528 568 IPR000225 GO:0005515
Lal16g0754 655 SMART arm_5 405 445 IPR000225 GO:0005515
Lal16g0754 655 MobiDBLite consensus disorder prediction 256 270 - -
Lal16g0754 655 Gene3D - 358 452 IPR011989 -
Lal16g0754 655 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Lal16g0754 655 SUPERFAMILY RING/U-box 265 350 - -
Lal16g0754 655 PANTHER U BOX DOMAIN-CONTAINING 18 652 - -
Lal16g0754 655 MobiDBLite consensus disorder prediction 244 270 - -
Lal16g0754 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Lal16g0754 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 416 IPR000225 GO:0005515
Lal16g0754 655 Pfam Armadillo/beta-catenin-like repeat 406 444 IPR000225 GO:0005515
Lal16g0754 655 Pfam Armadillo/beta-catenin-like repeat 488 526 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0754 Lal-Chr16 4870294 4873804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0754 1 654 U-box Gene Family AT1G23030 60.823 0.0 739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0754 16 4870294 4873804 Lal16g0754 16 4870294 4873804 ECH
Lal16g0754 16 4870294 4873804 Lal15g0720 15 5022333 5027064 LSH