Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0680 ATGGAGAGAGAAGCAGAACAAGGTAGAGTAGTTGGAGAAATTGGAGGAAACAGGAATCAACAACCTCAATCTCAGCATCCACCACAACCACAACAACAGCATCAGCAATGTCCACGTTGCGAGTCTCTGAACACCAAGTTCTGCTATTACAACAATTATAGCTTGTTGCAGCCTCGGTTCTTCTGCAAAGCATGTAAAAGGTACTGGACACAAGGTGGAATCTTGAGGAACATCCCTATTGGTGGCGCTTCCCACAAAAGGAAGCGCCCAAAAGGTTCTTCTTCATCATCTTCCACCACCATGAATTCTTCTTCCGGACAACTACAATCACAACCCCAACCGCAAACGCAACCGCAACCAGGTACTCAGGAAGTGGTCCAACAACTCCAAAACCAGCCAAATATGACAACTTTGATGAGGCCTACTCCTCCTAGGGTGGTTCAGTCAACTAATCCTTATTACCAAGGTGGCAATGTTGGTGGTGGATATTTGTCTTCTCTGGCCGCGGTTCACTCTCTGAACCCACCACCAGAACCCTTGAATCAATCTCTAAATGTTAGAGTTGGTGATGTTATGGCTTCTACTAATTTAGGTCTTCTCTCTGGCTTCAATGACCATGCCTCTCTTGACTTACAGCACCAATACCCTAACCAAATTCATGCACCGCGATTCTATCAAATTGGTAACAACGGGATGGTAGAACCTATGCTTCGCCAAGAATATGGTTTCAATGTTCCATCAAACATGGCTAATAACGCTACTGCTTATCGTTCCGATCACTGGCCCCAAAGCTTCATCAATAATGCTAATCATAGGGCACCTGATACTTCTTTGTGGAGTACTGTCAGCACCACTTTTTCCATTAGTAGTAACACTCGGAACAACACCAGAGGCGGTGGTTCTTCTTCTTTGATGCCAAATCATTGGATTAATTTTCCAGGGAATGGCTCTCCTTATCAGTAA 963 0.4476 MEREAEQGRVVGEIGGNRNQQPQSQHPPQPQQQHQQCPRCESLNTKFCYYNNYSLLQPRFFCKACKRYWTQGGILRNIPIGGASHKRKRPKGSSSSSSTTMNSSSGQLQSQPQPQTQPQPGTQEVVQQLQNQPNMTTLMRPTPPRVVQSTNPYYQGGNVGGGYLSSLAAVHSLNPPPEPLNQSLNVRVGDVMASTNLGLLSGFNDHASLDLQHQYPNQIHAPRFYQIGNNGMVEPMLRQEYGFNVPSNMANNATAYRSDHWPQSFINNANHRAPDTSLWSTVSTTFSISSNTRNNTRGGGSSSLMPNHWINFPGNGSPYQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0680 320 MobiDBLite consensus disorder prediction 93 128 - -
Lal16g0680 320 MobiDBLite consensus disorder prediction 290 320 - -
Lal16g0680 320 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 23 318 - -
Lal16g0680 320 MobiDBLite consensus disorder prediction 77 128 - -
Lal16g0680 320 MobiDBLite consensus disorder prediction 1 37 - -
Lal16g0680 320 MobiDBLite consensus disorder prediction 14 37 - -
Lal16g0680 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 318 IPR045174 GO:0003700|GO:0006355
Lal16g0680 320 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Lal16g0680 320 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Lal16g0680 320 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0680 Lal-Chr16 4396717 4397679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0680 20 100 C2C2-Dof Transcription Factor Family AT3G45610 62.963 8.99e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal16g0680 zf-Dof 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0680 - - lang:109349998 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0680 16 4396717 4397679 Lal16g0680 16 4396717 4397679 ECH
Lal16g0680 16 4396717 4397679 Lal23g0940 23 11508257 11509069 LSH
Lal16g0680 16 4396717 4397679 Lal5g1724 5 19357738 19358694 PCT
Lal16g0680 16 4396717 4397679 Lal11g0196 11 1390331 1391209 PCT
Lal5g1724 5 19357738 19358694 Lal16g0680 16 4396717 4397679 PCT
Lal11g0196 11 1390331 1391209 Lal16g0680 16 4396717 4397679 PCT