Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0483 ATGTCACAAGATGATGAAACACCTCCAAAATCAGCAGCAACACCCAAAGACGTTAACCATGAGAATAATAACCAACAAGGTTCTAATTCTGGTAGCAGGAAAAGTGGCACTGGCACAACAAGGCCACAAGAACAAAGCTTGAAGTGTCCACGATGTGACTCACCAAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCACTTCTGCAAAACCTGTAGAAGATACTGGACAAAAGGTGGCGCTTTGAGAAACGTCCCTATAGGTGGAGGGTGCAGGAAGAACAAGAAGGTTAAGTCTTCAAGGCTCTCATGTGATTCAATAGACTCTGGTGGTGGTACTTCCTCTTCAGATCATCACCACCAGCACCAACTTGGTGGTGGCCTTAAGTTTCTTCATTCTCTTTCATCACCTCCTGTTCGTGATTTTCAACTTGGTGGCTTAACTTTACCATTCCTTCATCACCCTCCAATTCCATCCACTAATTCCATCTATAACAACAACCAGTTTTCTGCTTTTGGAGATGTTTCAAATGCTCCAAGTTTCAACCTTGACCCTTCTTCTGGTACCACCGCCCCAAGTTCTAATTTGCTTGGTTTGAATTACCCTTTTAGTGGTGCAAATGCTGCAATACAGGGTGGTATGAGTTCAATGAACCTTCATAACACCAACCTTGCTTCTTCTATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTTCAGCAGCAGAGGTTGGCTATGCTGTTTTGTGGAGAAAACCAGAAATATGCTAGTAACCTTGAGATTAACCAGACCCAGAGGCCTCAACCCATTTTGTTTCAGAACCTTGAGATTTCAAAGCCGGAGACTTTCCCTATTGGGGTTTCAAGAAAAGAAGATACAAGTGGTGGTGGAGGGGATATACCAACTGAGTGGTTCTTTGGGAATTCTTATGCTTCAGTGACAGCAACTCCTACACCAACTACTACTGATGGTGGCGGTGGACATGGCAATGACAATGATAACGGTAACAACTGGAATGGTAATGTTCATGGTTGGGGTGATGTTAATGAGCAGCAGCAATATAATTCAGGTTTGACAACTAGCGCAAAAATGGAAGTCAGATGGAGGTGA 1134 0.4374 MSQDDETPPKSAATPKDVNHENNNQQGSNSGSRKSGTGTTRPQEQSLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSIDSGGGTSSSDHHHQHQLGGGLKFLHSLSSPPVRDFQLGGLTLPFLHHPPIPSTNSIYNNNQFSAFGDVSNAPSFNLDPSSGTTAPSSNLLGLNYPFSGANAAIQGGMSSMNLHNTNLASSIESLSSINQDLHWKLQQQRLAMLFCGENQKYASNLEINQTQRPQPILFQNLEISKPETFPIGVSRKEDTSGGGGDIPTEWFFGNSYASVTATPTPTTTDGGGGHGNDNDNGNNWNGNVHGWGDVNEQQQYNSGLTTSAKMEVRWR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0483 377 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Lal16g0483 377 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
Lal16g0483 377 MobiDBLite consensus disorder prediction 16 49 - -
Lal16g0483 377 MobiDBLite consensus disorder prediction 1 49 - -
Lal16g0483 377 MobiDBLite consensus disorder prediction 108 126 - -
Lal16g0483 377 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Lal16g0483 377 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 24 358 - -
Lal16g0483 377 MobiDBLite consensus disorder prediction 107 128 - -
Lal16g0483 377 MobiDBLite consensus disorder prediction 324 350 - -
Lal16g0483 377 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 358 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0483 Lal-Chr16 3032394 3034451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0483 14 357 C2C2-Dof Transcription Factor Family AT5G65590 38.953 8.71e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal16g0483 zf-Dof 9.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0483 - - gmx:100780729 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0483 16 3032394 3034451 Lal15g0428 15 2930078 2931055 LSH
Lal16g0483 16 3032394 3034451 Lal23g1089 23 12544956 12546056 LSH