Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0477 ATGTCTCCACCACTGCTGGTTATGGAGGAGGAAGGGCGGGGCAAAGTCTCGTCGATGGTAGCATCTGCATCTTCGCAATCCTTAGACTGTTTCTCCCAAGATGGGATTGAATTGAAGGAAAGAAATTATCTAGGATTGTCTGATTGCTCATCAGTGGACAGTTCTAGCCCTATTGTCCCAAGCTTCTCTGATGAGAAAAAGGGGAACCTGAATTTGAAGGCCACAGAGTTGAGTCTGGGTCTTCCTGGATCGCAATCACCCGAATGGAACCCAGATCTTTACTCTTCAAGCTCGGCAAAACTTGATGAAAAACTACTGTTCCCTTTGCTTCCTATGAAAGATGAAATCAGCTTGGCATCCCAGAAGACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCCGATACCATTGATGGGTTCCCTCAGGGAATGTTTACTGGCAATGCAGGGATGGGTCTAATGCTGTCGCCTAGACCTTCTGGAGTTCAGCCAACCACAGTGAAAGAAATTCAAAGCAATGTGTTACAAGAACGGCCTTGTGCAGCTAATGGTGCTTCTATTAGTGGCAGTGCTCCGGCTTCTAAGGCACAGGTTGTTGGATGGCCTCCTATCAGATCATTTAGGAAAAACTCGATGGCCACCACTTCAAAGAACAATGATGAAGTTGATGGAAAACCATGTCCTGCCACTCTCTTTGTGAAGGTCAGCATGGATGGTGCCCCTTATCTTAGGAAAGTAGATCTTAGTAATTATACAACATATCAGGAACTATCTTCTGCCCTTGAAAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGATCCCATGGAACTCCAGGAAAAGAGATATTGAGTGAGAGCAAGCTGAGGGACCTTCTGGATGGTTCAGAATATGTGGTCACTTACGAAGATAGAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGATATGTTCATTGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGGTGCAGCTTTTAAGGAAAATGTATTCTGCAAGTCATTAAATTGCTTTAAGTTTTCCACTGAAAAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAGACACTATCAGGGACTGATGACTGCTATTTGGTGGTTGAAGCACAATTCAGATATATTATATGTTTTTAGTCTTGATCTTCTGGAACCATTACGTGTTTGGTTGAATTTAACGTCTGATTGTCTATCACTGCCAACAATTCCTGTGTTTTATTTTCTTCCGGGGACTGCGCTTTTGCCAAATTTGGGCGTAGCTTTGGAGCTTTGA 1320 0.4394 MSPPLLVMEEEGRGKVSSMVASASSQSLDCFSQDGIELKERNYLGLSDCSSVDSSSPIVPSFSDEKKGNLNLKATELSLGLPGSQSPEWNPDLYSSSSAKLDEKLLFPLLPMKDEISLASQKTVVSGNKRGFADTIDGFPQGMFTGNAGMGLMLSPRPSGVQPTTVKEIQSNVLQERPCAANGASISGSAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPCPATLFVKVSMDGAPYLRKVDLSNYTTYQELSSALEKMFSCFTLGQCGSHGTPGKEILSESKLRDLLDGSEYVVTYEDRDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLGAAFKENVFCKSLNCFKFSTEKLPGPWKSPKAGVRHYQGLMTAIWWLKHNSDILYVFSLDLLEPLRVWLNLTSDCLSLPTIPVFYFLPGTALLPNLGVALEL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0477 439 Gene3D - 227 343 - -
Lal16g0477 439 PANTHER AUXIN-INDUCED PROTEIN 14 342 - -
Lal16g0477 439 Pfam AUX/IAA family 75 338 IPR033389 -
Lal16g0477 439 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 342 IPR003311 GO:0005634|GO:0006355
Lal16g0477 439 SUPERFAMILY CAD & PB1 domains 226 330 - -
Lal16g0477 439 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0477 Lal-Chr16 2979243 2983601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0477 232 328 B3 DNA Binding Superfamily AT2G46530 35.052 1.61e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lal16g0477 AUX_IAA 2.4e-86 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0477 16 2979243 2983601 Lal15g0417 15 2831801 2836234 LSH
Lal16g0477 16 2979243 2983601 Lal15g0730 15 5117291 5135073 PCT
Lal15g0730 15 5117291 5135073 Lal16g0477 16 2979243 2983601 PCT