Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0203 ATGACTTCGACTGACTCTGGCGGCAACCACCGCCCATCGAAGACCCAGAACCATGGAGCTCAGCCTCCGGAACAAGAGAACCTCCCATGTCCACGGTGTGACTCTATCAACACCAAGTTCTGTTACTACAACAACTATAATCTCTCACAGCCACGTCACTTCTGCAAGTCATGCCGTCGCTACTGGACTCACGGCGGCACCCTCCGCGACATTCCCGTCGGCGGTGGAACCCGCAGGAACGCAAAGCGATCCCGCACACTGTCATCATCAACAACCGTGATGACTTCTTCAAGTTCTGTTCAGGATCACACATCGTTGGTGCCAATCCCTCAGGGAGAAAAGGTCCATGCAAATCCTGTAAGTGTATGTGGAACTGGGGGCTTTACTTCGTTACTGAACAATGGGCTTGGGCTTGAAGATGTGGGTTTTGGTATGGGTAGAGTAGGATGGGCTTTCCCGGGAATGGTGGATGGTGTTGCAGTTGCGGCTTCAGGAGTTGGGAACACGTGGCAGCAGTTTGAAAGTGGTGGTGAAGATGGGTTTGTGGGTGGAGACTGTTTCACTTGGCCTGGACTAGCGATTTCAACACCTGGATTAATTCCTGATTTGAAAACATGGGTTAAAACTAGGATGAATATACCCAGAGGCTCAGGCTATTAG 660 0.5121 MTSTDSGGNHRPSKTQNHGAQPPEQENLPCPRCDSINTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRRNAKRSRTLSSSTTVMTSSSSVQDHTSLVPIPQGEKVHANPVSVCGTGGFTSLLNNGLGLEDVGFGMGRVGWAFPGMVDGVAVAASGVGNTWQQFESGGEDGFVGGDCFTWPGLAISTPGLIPDLKTWVKTRMNIPRGSGY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0203 219 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 5 199 - -
Lal16g0203 219 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Lal16g0203 219 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Lal16g0203 219 MobiDBLite consensus disorder prediction 73 103 - -
Lal16g0203 219 MobiDBLite consensus disorder prediction 1 26 - -
Lal16g0203 219 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 199 IPR045174 GO:0003700|GO:0006355
Lal16g0203 219 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Lal16g0203 219 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g0203 219 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0203 Lal-Chr16 1233330 1234289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0203 1 198 C2C2-Dof Transcription Factor Family AT3G50410 41.897 4.68e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal16g0203 zf-Dof 4.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0203 - - gmx:778095 224.172