Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0147 ATGCGAACACTTTGTGATGCTTGTGAGAGCGCGGCTGCTATTGTTTTCTGTGCTGCTGACGAGGCCGCTCTCTGTCGTGCCTGTGATGAAAAGGTTCACATGTGTAACAAGCTAGCTAGCAGGCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGCGGTGCCTCGCTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGACACAGATGGAAGTTCCCTTTGTCTGCAGTGTGATATGCTAGTTCATGTTGGAGGTAAAAGAACACATGGAAGATATCTTCTTTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAACCTAGCCTTGCTGGAAACTCTCCTTCGCAACCTGTGGAACCCGGTGAGACTAAAGGAGGGCAAAATTCACTTCCCAGACTAAAGATGGGAGATAAACAACAAAATCACATGATGCCTATGCTTCCATTGCCAGAACCTGGTGCTAATGGTCAGGCCAAGATGGAAACTGAAATGTTTGATTTGAACATGAATCCTAACAAAATACATGAACAAGCATCTAATAATCAGGGACTCATATATTCTCATAAAACTTTTGGAATTCGTTCCTTCAGAAGATCAGAACTTATAAAAATCTCTGGTCTGGATTCTGCCTCTTATAACTGA 645 0.4341 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSAVPRCDICENAPAFFYCDTDGSSLCLQCDMLVHVGGKRTHGRYLLFRQRVEFPGDKPSLAGNSPSQPVEPGETKGGQNSLPRLKMGDKQQNHMMPMLPLPEPGANGQAKMETEMFDLNMNPNKIHEQASNNQGLIYSHKTFGIRSFRRSELIKISGLDSASYN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0147 214 CDD Bbox1_BBX-like 4 47 - -
Lal16g0147 214 CDD Bbox1_BBX-like 56 96 - -
Lal16g0147 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal16g0147 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Lal16g0147 214 MobiDBLite consensus disorder prediction 110 124 - -
Lal16g0147 214 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Lal16g0147 214 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lal16g0147 214 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lal16g0147 214 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lal16g0147 214 Pfam B-box zinc finger 53 91 IPR000315 GO:0008270
Lal16g0147 214 Gene3D Classic Zinc Finger 2 91 - -
Lal16g0147 214 MobiDBLite consensus disorder prediction 106 135 - -
Lal16g0147 214 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0147 Lal-Chr16 892222 894686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0147 1 191 C2C2-CO-like Transcription Factor Family AT4G38960 59.585 1.34e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal16g0147 zf-B_box 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0147 - - lang:109348718 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0147 16 892222 894686 Lal23g1455 23 14914968 14916678 LSH