Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0988 ATGATCACTGACATGAAATCTACAAGTGCCTTGGCTGCCAAGACAGCAAGAGCTTGTGATAGCTGCCTAAGGAGAAGAGCAAGGTGGTTTTGTGCAGCTGATGATGCTTTCTTATGCCATAGTTGTGACTCTTTGGTTCACTCAGCAAACCAATTAGCCAATAGGCATGAAAGAGTTAAGCTTCCAACTGCATCAAACAAGGTATCAACAACATCAACAGCACAAGCATGGCACAGTGGCTTCACACGCAAGGCAAGAACCCCGCGTAACAACAAGCACTTGGCACTTCAACAAAGACTCAAACATAAAATGCTTTTCAACAACCCTAGTACTAATGTTCTTCCTGTTGTGCCTGAACTTGGAGGAGGAGAAGAACAGGTGTTTAATGATGAAGAGAGTGAAGAACAGATGCTATGCCGCGTGCCTGTGTTCAAATCATTTGGTGCTGCTGAGTTTTGCAATATATACACCAATGAAGTTAGTATGGAAAATGATGCTGCTGTTGAAGAAGCATGTGACTTGAATAGTTTATCTGAGTTTCTGGCTTCAGATATGGATCTTGCTGAGTTTTCTGCTGATGTTGAAAGCCTTCTTGGAACATCAGAAGTGTTTGAATATAAAGAAGATGATGAAATAGATGGAAGGAAAAGCAAAGATACAAATGCAGTAGTTAGGGTTAAGGATGAAGAACTTGATGAAGACACAGCATGTCATCTTGACTCAGTTTTTAACATGACAAATGAGGGCTTAGATTGGAACGTTGATTCAGTGCTATTAACAGCACTATCAGCTTCTGCACCAGAAGAGGAGGAAAAGGTGGTGGTGTCTGTGGTGGCACCTGAGAGTAAGGTGGAAACAAAGAGGGACATAATTTTGAGACTAAAGTTAAACTATGAGGAAGTTATTACTGCTTGGGATAGTCAAGGTTCTCCATGGATAACAGGAAACCCACCTAAGTTCAATTCTGATGACTGCTTGCAAGACTTTTTGGGTTCATCAAATGGTGGAGATGTTCAATACTCTTCTTATGCGGAAATAAGAAGGTTAAGGGAACACTTTGTAGATGGGGAAAGAGAAGCAAGAGTATCAAGATATAGAGAGAAGAGAAGAACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGAAAGTTAAATGCAGAGAAGAGACCAAGAATGAAAGGTCGTTTTGTCAAGAGGCCATGCTTTGTTGAAGGAGCCAATAATACTTTTCAGCCTTACCATTGA 1248 0.4062 MITDMKSTSALAAKTARACDSCLRRRARWFCAADDAFLCHSCDSLVHSANQLANRHERVKLPTASNKVSTTSTAQAWHSGFTRKARTPRNNKHLALQQRLKHKMLFNNPSTNVLPVVPELGGGEEQVFNDEESEEQMLCRVPVFKSFGAAEFCNIYTNEVSMENDAAVEEACDLNSLSEFLASDMDLAEFSADVESLLGTSEVFEYKEDDEIDGRKSKDTNAVVRVKDEELDEDTACHLDSVFNMTNEGLDWNVDSVLLTALSASAPEEEEKVVVSVVAPESKVETKRDIILRLKLNYEEVITAWDSQGSPWITGNPPKFNSDDCLQDFLGSSNGGDVQYSSYAEIRRLREHFVDGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRPCFVEGANNTFQPYH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0988 415 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lal15g0988 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Lal15g0988 415 CDD Bbox1_BBX-like 18 59 - -
Lal15g0988 415 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Lal15g0988 415 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 406 - -
Lal15g0988 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
Lal15g0988 415 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lal15g0988 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0988 Lal-Chr15 7892286 7894946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0988 5 400 C2C2-CO-like Transcription Factor Family AT1G25440 43.602 9.84e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal15g0988 zf-B_box 8.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0988 15 7892286 7894946 Lal15g0988 15 7892286 7894946 ECH