Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0983 ATGAGAATCGAAAGGCTTCTTCTCATCATCATAATCCCAATCTCCACCCTCCATTCCACCGCCAGCGACGACGACGGCGGCTCCACCGATTTCATCCGTAGAAGTTGCAACACTACACTCTACCCTGACGTCTGCTTCACCTCCCTCTCTCGCTACGCTAATGCCGTCCAACAAAACCCAGGCCACCTCGCTCGAGTCGCAATCTCCGTCACGCTCTCCAAGGTTCATCGCGTGGCGTCCTACGTCTCAAACCTCACGCGCGAGGCCGACTACAGCGGCGACTCACGCGCCGCGTCTGCAATCCACGACTGCTTCACCAACCTCGGTGACGCCGTCGACGAAATCCACGGCTCGCTCAAGCAGATGCGGCAGATTGGAGCCGCCGGCTCCGGCGCCGGATCGTTCCTGTTTCAGATGAGTAACGTGCAGACGTGGATGAGTTCGGCGCTAACAGACCAAGAAACTTGTACGGATGGGTTCGAGGATGTAGAGGATGGAACGGTGAAGACGCAGGTATGTGATCGTGTCTCGAACGTGAAGAAGTTCACGAGTAATGCTTTGGCACTCGTGAATAGTTACGCCAATAAAGGAACACCTTGA 600 0.5583 MRIERLLLIIIIPISTLHSTASDDDGGSTDFIRRSCNTTLYPDVCFTSLSRYANAVQQNPGHLARVAISVTLSKVHRVASYVSNLTREADYSGDSRAASAIHDCFTNLGDAVDEIHGSLKQMRQIGAAGSGAGSFLFQMSNVQTWMSSALTDQETCTDGFEDVEDGTVKTQVCDRVSNVKKFTSNALALVNSYANKGTP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0983 199 CDD PMEI-like_3 35 195 - -
Lal15g0983 199 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 196 - -
Lal15g0983 199 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 8 196 - -
Lal15g0983 199 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 193 IPR006501 GO:0004857
Lal15g0983 199 Pfam Plant invertase/pectin methylesterase inhibitor 30 189 IPR006501 GO:0004857
Lal15g0983 199 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 193 IPR035513 -
Lal15g0983 199 SMART PMEI_2 27 189 IPR006501 GO:0004857
Lal15g0983 199 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 193 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0983 Lal-Chr15 7843435 7851159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0983 29 189 Carbohydrate Esterase AT5G53370 30.675 9.72e-18 79.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0983 15 7843435 7851159 Lal15g0983 15 7843435 7851159 ECH
Lal16g1000 16 6634557 6635165 Lal15g0983 15 7843435 7851159 LSH