Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0936 ATGTCTCTTGTAACAGAAAAAACAACAACAAAAGAAGAACACATGAAATGGAGAAAACCCAGAAACCAAATCCACATTACTGAAACATATCAAAACCCAGAAATCACTTCAATAACTCAATCCATAACTTGCAAATCCACCATTTCCTCTTTCTTCAGCAACAACAATGAAACCACCAACCGCCACCATAGTAGGAAAAAAGTAAACTTTTCTGCTGCATCAACCTTCAGGGGCTTGGGCTGCACCGCCGGTGCATCTCAACAGGTGTCGGTGCCGGCGGTGATTCTAAGCTCCGGTGATTGGGTAGAAAAGAAGAAGAAAAAGAAAGGAAGAAAAAATAAGCACAAAATTAGGAACAGTAATGTTGTTGTTATTCCAGAAGGTTCTAGTAGTTCAAGTAATTCACCTGGTTTTGTTGATTTTCAAGATGTTTGGTGTGGCCGAGGAATTGGGTTCTCAACAACTGATGCTACTGTTTCTGTTGATTGTGTTGTGACAAAGAAAAATGTGTCTTCAAGAGGAAAAATTGATGTTGAAAAAATAACTCATAGAGAGAGTTCATCTCAGTTGGGAAGGAGTTCTGGCACTCCAGGAACAATCTCGTTAATGGACACTGATCCCGAAATTTTTGCAGCCTCGGACTCGGAATCCTTTGGACCTGTGACTCCATACTATCGCCATATTCGAGATCCTTTGTCTGATGATTCCTCTCATGGTTTTGCTGAGGTTTTACGATTAAATTCGCATGACCAGTTCAGAGACTGGAGACTTGATATTGATAACATGACATATGAGCAATTGCTTGATCTCGGTGAGAGAATTGGTTATGTAAACACTGGACTTAAAGAAGATGAGATGGGGTGCAACATAAGGAAGAGTAAGTTTCAATTTTCAGATGATGCATTAAAACATGAAGTAGATAAAAAGTGCAGCATTTGTCAGGAGGAGTTTGAAGCAGATGATGAGTTGGGGAAGCTGAATTGCAAACACAGCTATCACTTTCAGTGTATAAAACAATGGATTGTGCAGAAAAATTTATGCCCAGTTTGCAAACAACAAGTCGTTGCTCGACACAGTGTGTGA 1083 0.3989 MSLVTEKTTTKEEHMKWRKPRNQIHITETYQNPEITSITQSITCKSTISSFFSNNNETTNRHHSRKKVNFSAASTFRGLGCTAGASQQVSVPAVILSSGDWVEKKKKKKGRKNKHKIRNSNVVVIPEGSSSSSNSPGFVDFQDVWCGRGIGFSTTDATVSVDCVVTKKNVSSRGKIDVEKITHRESSSQLGRSSGTPGTISLMDTDPEIFAASDSESFGPVTPYYRHIRDPLSDDSSHGFAEVLRLNSHDQFRDWRLDIDNMTYEQLLDLGERIGYVNTGLKEDEMGCNIRKSKFQFSDDALKHEVDKKCSICQEEFEADDELGKLNCKHSYHFQCIKQWIVQKNLCPVCKQQVVARHSV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0936 360 ProSiteProfiles Zinc finger RING-type profile. 310 351 IPR001841 -
Lal15g0936 360 SMART ring_2 310 350 IPR001841 -
Lal15g0936 360 SUPERFAMILY RING/U-box 296 356 - -
Lal15g0936 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 356 IPR013083 -
Lal15g0936 360 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 358 - -
Lal15g0936 360 CDD RING-H2_PA-TM-RING 310 351 - -
Lal15g0936 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 358 IPR045191 GO:0061630
Lal15g0936 360 Pfam Ring finger domain 309 351 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0936 Lal-Chr15 7196694 7200856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0936 13 265 C3H Transcription Factor Family AT1G73760 40.714 1.99e-35 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0936 15 7196694 7200856 Lal15g0936 15 7196694 7200856 ECH
Lal15g0936 15 7196694 7200856 Lal23g0678 23 9434197 9438836 LSH