Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0902 ATGTTATTAGCCAATAATAGCTTGTCACCTCCCTCTTCAGACCCATTTTCATGTGGTGAGAATGGTATTTCTGCTTCTAATACTAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTATCACCAAAAACATTGCTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAAAATCTTCAGATGCACCGGCGCCGCCACAAGGTGCCGTGGAAGCTGTTGAAGAGGGAGACTCCGGTTGTGAGAAAGAGAGTATTTGTGTGCCCTGAACCTTCTTGCTTGCACCATGATCCTTGTCATGCCCTTGGTGATCTTGTTGGGATCAAAAAACATTTCAGGAGGAAGCATAGTACTCATAAACAATGGGTTTGTGAAAGATGCTCCAAAGGGTATGCAGTGCAATCTGATTACAAAGCACACGTTAAAACTTGTGGCACTAGAGGCCACTCTTGTGATTGTGGCCGCGTTTTTTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCACCATGGGGAGGATAAGGCAAGAACCACAGACATTACAAGCTCCATGTTTGTCTCGAACCGCTTCGAGCCCGAGCCCTTCAAGTGAAACCAATTTTAGCACAGCTCCATGGCCACCCTCTCTAGTCATACCAAAGAACCAGTATCTTGTTATAAAAGCAACACAAGAAAAACACACATTCTTGAACCCTACAACTACTACTACTGCTATTGTTACAACTAATGCTGAAACCTCATCCAAGAACAACAATAAACTAATCCACCCCAACTTGGATCTTAAACTCTCCACTATTGATCATCATGTGGTTGCTGTTCCAATATCTTTACCATCGCCTAAGAACATATGTGGCAATGGATTGCAACTATCTATTGGATCATCTGATATAAGTGATAAAAGTACTCAATCAAACAATAGCATCGAGGGTGAGGGTCATGTGCGTGAGCAAGCACGTGAGGAGTTGAGGATAGCAATGGCGGAGAAGGCTTATGCTGAGGAAGCAAGGAAGCAAGCAAAGACACAGATTGAACTGGCTGAGCTTGAATTTGCAAATGCAAAGAGGATTCGACAACAAGCACAAGCTGAACTGAACAAAGCTTATGGTTTGAAACAACATGCAATCAAACAAATCAATTCAACTATGCTTCAAATAACTTGCCATTCGTGCAAGCAACATTTTCAAGCATCGAGTGAAGAAGGTGTCCATGTAGAGAAGAATGGTAATGAAAAACAACATGTCAAAACCACTAACTCTTAG 1299 0.4319 MLLANNSLSPPSSDPFSCGENGISASNTRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSTHKQWVCERCSKGYAVQSDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDACTMGRIRQEPQTLQAPCLSRTASSPSPSSETNFSTAPWPPSLVIPKNQYLVIKATQEKHTFLNPTTTTTAIVTTNAETSSKNNNKLIHPNLDLKLSTIDHHVVAVPISLPSPKNICGNGLQLSIGSSDISDKSTQSNNSIEGEGHVREQAREELRIAMAEKAYAEEARKQAKTQIELAELEFANAKRIRQQAQAELNKAYGLKQHAIKQINSTMLQITCHSCKQHFQASSEEGVHVEKNGNEKQHVKTTNS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0902 432 Coils Coil 328 376 - -
Lal15g0902 432 MobiDBLite consensus disorder prediction 308 328 - -
Lal15g0902 432 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lal15g0902 432 PANTHER OS03G0310200 PROTEIN 4 417 IPR039288 GO:0009630
Lal15g0902 432 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Lal15g0902 432 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Lal15g0902 432 MobiDBLite consensus disorder prediction 199 218 - -
Lal15g0902 432 SMART c2h2final6 57 79 IPR013087 -
Lal15g0902 432 SMART c2h2final6 98 128 IPR013087 -
Lal15g0902 432 SMART c2h2final6 134 161 IPR013087 -
Lal15g0902 432 MobiDBLite consensus disorder prediction 1 31 - -
Lal15g0902 432 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Lal15g0902 432 MobiDBLite consensus disorder prediction 1 44 - -
Lal15g0902 432 MobiDBLite consensus disorder prediction 308 324 - -
Lal15g0902 432 Gene3D Classic Zinc Finger 45 130 - -
Lal15g0902 432 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 4 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0902 Lal-Chr15 6826515 6830260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0902 20 409 C2H2 Transcription Factor Family AT2G01940 55.802 1.29e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal15g0902 zf-C2H2 0.004 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0902 15 6826515 6830260 Lal16g0919 16 6080436 6083912 ECH
Lal15g0902 15 6826515 6830260 Lal15g0902 15 6826515 6830260 ECH
Lal16g0919 16 6080436 6083912 Lal15g0902 15 6826515 6830260 LSH
Lal15g0902 15 6826515 6830260 Lal8g0489 8 3319854 3323164 PCT
Lal15g0902 15 6826515 6830260 Lal25g0493 25 3460300 3463898 PCT
Lal8g0489 8 3319854 3323164 Lal15g0902 15 6826515 6830260 PCT
Lal25g0493 25 3460300 3463898 Lal15g0902 15 6826515 6830260 PCT