LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g0781	ATGTTTATTTCCCTTGCAGATTTGAGATATTCAGATTCATCACATCACATCAATAATACTATGGAGGAGAGGAATTTTGTGTGCAAGTATTGTAGCAAGAGGTTTCTTTGTGGGAAGAGTTTAGGTGGTCACATTAGGACTCATATTACTGAAGAAAGGAACAATAATAAGAATAATAATGCTGCTGAATGTGATAATTTCAAGTTTGATGCTGCTATTAGAAGGAAGAAGAAGAAAGATTTATGGAGTGAAGATGGTTATGGATTAAGAGAAAACCCAAAGAAAACAGTGAGGTCTGTGAATTCCAATGCTACTTTGGAACAACAACAACAACAAGAGGAGGTGGTGGTGGTGGAGAAGTTCTGCAAAGAATGTGGTAAAGGGTTTTCATCATTGAAAGCACTTTGTGGCCACATGGCTTGTCATTCTCAGAAGCAGAAGAAATTGGTTTTGGATAGTGAATCTGATACTGAAGAGATTTGTGATGTTTCAAAGAATCCAAGGAGATCCAAGAGAATGAGGTTCAAGACCATTAGCCTTGGCAATAATCAGAGTTATTCTTCTTCTGTTCCTTTGGTAAATGGTTCATCTTCTGTGTCAGAGGTTGAACAGGAGCAAGAAGAGGTTGCAAGGTGTTTGATGTTGTTGTCCAAAGATTCAAGCCATAAGGGTCCTTTTGCTTTGGTTACTGAGTCTTCTGAAAACAACTCAATTGTTGTTGAGGCAGCAAAAGCATCACATAATAATATGAGGATTTGTATAAAAAATGGTAACAAGTTTGTCTCTAATGGTTATGATTCTGTGGAGAACAATGTGCTGAAGTTAAAGTCTATTGATAACTCAGATTCTGGATATTACACATATGGGCTTCAAACCAAAATGGCAAAATCAGATGTTTCAAATGATGAATTTAAGGCAGAATTTGAAAATTACAACGCCGAATCGAGGAAGATGCTGAGCATGAATGAAGGGATCAGCAAATACACTGTAAGGAAGCTTGATTCTAGAAACATAGCCAATTATGATTCTTTTGGCCATAGCAAGAAGGACACAGAATATAGTTTTGCCAATGATGAAATCTATGAGACTAGTGGAAAAGGATGGAACTATGAAAGTTTGGCTTATGATTCAACAGAAGAGAGTGATGAAAGCAGCTCAGACACTGATTCTTTCCCTGTTCCAAAGTCTCATAGCAATAAGGTTTTCAATGGAAAGAAAACTAGCAAGGCTAAGAAGAAGTCAAAGAAAAGCAAAGAATTTGAGTGTCCAATCTGCTACAAGATTTTCAAGTCAGGCCAAGCCTTAGGAGGTCACAAAAGATCTCATTTTGTTGGAGGTTCTGAAGAAACTTCTGTGATCATTAACCAAAGTCTTTGCCTTATTGATCTCAATCTACCAGCTCCTGTTGATGAATAA	1416	0.3715	MFISLADLRYSDSSHHINNTMEERNFVCKYCSKRFLCGKSLGGHIRTHITEERNNNKNNNAAECDNFKFDAAIRRKKKKDLWSEDGYGLRENPKKTVRSVNSNATLEQQQQQEEVVVVEKFCKECGKGFSSLKALCGHMACHSQKQKKLVLDSESDTEEICDVSKNPRRSKRMRFKTISLGNNQSYSSSVPLVNGSSSVSEVEQEQEEVARCLMLLSKDSSHKGPFALVTESSENNSIVVEAAKASHNNMRICIKNGNKFVSNGYDSVENNVLKLKSIDNSDSGYYTYGLQTKMAKSDVSNDEFKAEFENYNAESRKMLSMNEGISKYTVRKLDSRNIANYDSFGHSKKDTEYSFANDEIYETSGKGWNYESLAYDSTEESDESSSDTDSFPVPKSHSNKVFNGKKTSKAKKKSKKSKEFECPICYKIFKSGQALGGHKRSHFVGGSEETSVIINQSLCLIDLNLPAPVDE	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g0781	471	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	21	471	-	-
	Lal15g0781	471	SUPERFAMILY	beta-beta-alpha zinc fingers	22	52	IPR036236	-
	Lal15g0781	471	SMART	c2h2final6	420	442	IPR013087	-
	Lal15g0781	471	SMART	c2h2final6	120	142	IPR013087	-
	Lal15g0781	471	SMART	c2h2final6	26	48	IPR013087	-
	Lal15g0781	471	MobiDBLite	consensus disorder prediction	387	401	-	-
	Lal15g0781	471	Gene3D	Classic Zinc Finger	6	85	-	-
	Lal15g0781	471	ProSiteProfiles	Zinc finger C2H2 type domain profile.	420	442	IPR013087	-
	Lal15g0781	471	Pfam	C2H2-type zinc finger	26	48	-	-
	Lal15g0781	471	Pfam	C2H2-type zinc finger	420	442	-	-
	Lal15g0781	471	Pfam	C2H2-type zinc finger	122	144	-	-
	Lal15g0781	471	SUPERFAMILY	beta-beta-alpha zinc fingers	121	442	IPR036236	-
	Lal15g0781	471	ProSitePatterns	Zinc finger C2H2 type domain signature.	28	48	IPR013087	-
	Lal15g0781	471	ProSiteProfiles	Zinc finger C2H2 type domain profile.	120	147	IPR013087	-
	Lal15g0781	471	ProSitePatterns	Zinc finger C2H2 type domain signature.	422	442	IPR013087	-
	Lal15g0781	471	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	21	471	-	-
	Lal15g0781	471	ProSiteProfiles	Zinc finger C2H2 type domain profile.	26	53	IPR013087	-
	Lal15g0781	471	MobiDBLite	consensus disorder prediction	379	412	-	-
	Lal15g0781	471	ProSitePatterns	Zinc finger C2H2 type domain signature.	122	142	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g0781	Lal-Chr15	5610805	5612909	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lal15g0781		zf-C2H2_6	1.5e-09	CL0361

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal15g0781	15	5610805	5612909	Lal15g0781	15	5610805	5612909	ECH