Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0730 ATGGATGATGAAGTTGTTCAGCGAGTTTTCCATGAAGGAGGTCGCGATTACTTTCAACAACAACAACCTTCAACTTCTTCTTCTTCCATCCTTCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGCTATTACTTGTTGGTAAAATCTATCCAAGAACTTCGAGAGAAGAAGGAGGGCATTGTTACGGTTGGCATTGGGGGTCCAAGCGGTTCTGGTAAAACAAGCTTAGCAGAGAAGGTCGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGAATGATCTGGATTCTATAGATTTTAATACCCTGATCAAGAATCTTGAGGATTTGAGTAAAGGCCATGACACATTAATCCCAGTGTTTGACTATCAGAAAAAAAGACGTGTTGGCTATAAAGCAATACAGAGTGCTTCATCTGGGGTGGTAATAGTTGATGGTACATATGCATTGCATGCCAAACTGCGGTCTCTGCTTGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGCTATGACATTGGAGAGTCTTGTTCACTGGATTACCTTATAGATAGCATTTTCCCATTATTTAGGAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTTAGAGAAGCAATCTACAAGGTTAAATGCAGAAGCGAGTCTCCAGATGAGCATTCAAGTTCTGCATTTCGAGGAAATGAATCAGAAACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCGGCTAGTGAAGAAGCAAAGATAAATGATTGGATCAAAGTGCGCCAGTCTGGAATTAGATATTATTTATCACTTGGTGATCAGAGGATTGTGGACAAAAATTTCATTATCAGGCCTAAAGCAGAGTTTGAGGTTGGACGGATGACATTAGGTGGATTGCTGGCTCTTGGGTATACTGTTGTGGTTAGTTATAAGCGTGCATCCACAACTGTCAATAATGGCAAGGTTTCAATGTCTTTTGAAACCATTGATGCTCTTGGTGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCATTGAGGATAGGTATCAATGGTCCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAATGTGTACCCCGTCTTAGTACACCACCACTTGTGACTAATGCATCTATGGCTGGTAGTCAAGAAACAGCAATTATTGCACCAAAGCCAATTCGCGTCACTCCTGACTTTGTTATTGGTCTTGAGGATATATCTCAGCCATGGACTCGTTCTCCAACAAAATCTAAAATGGAACCTGTTGTGGGAACGTGGCAATTCGTATCTTCAGATTCCTCTGAGCTTGACAACTCGGTCCTAGAGTTCTCTCATGAAGCAACCACAGATCCTTCATCTTTCAGGGATACCATTAGGCTTGCTCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCGGTCATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGAAAAACTAGTTTGGCTCATAAGATGGCTAATATCATTGGTTGTGAAGTAGTTTCCTTGGAACACTATTATATACAAGTAAAGGATTTTAAGCATGATGACTACAACTCTCTTGATTTGTCTTTGCTATCAAAGAATATTGATGATATAAGAAATGCCCGAAGGACAAAAGTACCTATATTTGACCTGGAAAGTGGTGCTCGGAGTGGATTCAAGGAACTTGAAGTTTCTGAAGACTGTGGAGTGATTATATTTGAAGGTGTCTATGCTTTGCATCCTGATATCCGAATATCGCTTGACTTGTGGATTGCCGTTGTGGGAGGTGTTCATTCACATTTAATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTGCCCAAAATGAGATCACAACGACAGTTTTTCCTTTGTTCCAGCAGCACATTGAACCTCATCTTGTTCATGCACACCTTAAAATTCGAAATGATTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTGTTTGTATTGAAGAGTAACAAGAAAGTAGCTTATCAAGATATTCTTGCAATTCTTGATCCAGCAAAATTTTGCAGTTCGGTCCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCTTCTAACGTGCAGTTGACAGATAGTGACTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATTAGGGAAGGGAACTTCATCATTCAGCCTAAAGTGGATTTTGACATTAGCATTAGCACAGTTGCTGGTCTTCTTAATCTTGGGTATCAAGCAGTTGCTTACATTGAAGCATCTGCATTCATATATCAAGATGGAAAGATTCTGATTGAGGTTGATCATCTACAAGACATATCTGGCCCATACATTCAGATCAAGGGCGTTAATAAAGATGCGGTGGCAGCAGCTGGTTCAATGCTTAAATTGGATGGTTCATATACTACCAAGAGTTATCTTGAAATAGTTTTGGAAAGACTACCAGCTATAGAAGGAACTTCTGGTGGGATTCACTCTCAGCAATCGTCAAGGCTGCTAGAGATTATTGAATTTATTCAGTCTCAGGGATGTAGCTCTGCTTCAGAATCTTCATCAAATAGGGTGGTCTCTCCAATTGGAGGGACTATTGATGAGATACAATCCAGGATTAGAAGGCTTGAAAGGTGGCTTGCGATAAATACGGTTCTATGGACATTTTTAATGTCTGCCCTCGTTGGCTTTTCACTGTATCAAAGGAGGCGTCAGTGA 2880 0.4021 MDDEVVQRVFHEGGRDYFQQQQPSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGIVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLDSIDFNTLIKNLEDLSKGHDTLIPVFDYQKKRRVGYKAIQSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGESCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPDEHSSSAFRGNESETDNFIEMYLRPPSASEEAKINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVNNGKVSMSFETIDALGETFMVMRGTNRKTVGTEALRIGINGPWITKSYLEMILERKCVPRLSTPPLVTNASMAGSQETAIIAPKPIRVTPDFVIGLEDISQPWTRSPTKSKMEPVVGTWQFVSSDSSELDNSVLEFSHEATTDPSSFRDTIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLEHYYIQVKDFKHDDYNSLDLSLLSKNIDDIRNARRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFIAQNEITTTVFPLFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDPAKFCSSVQKFIDIYIRLPGIPSNVQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDISGPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPAIEGTSGGIHSQQSSRLLEIIEFIQSQGCSSASESSSNRVVSPIGGTIDEIQSRIRRLERWLAINTVLWTFLMSALVGFSLYQRRRQ 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0730 959 SUPERFAMILY CYTH-like phosphatases 732 866 IPR033469 -
Lal15g0730 959 CDD UMPK_like 526 694 - -
Lal15g0730 959 SMART AAA_5 523 667 IPR003593 -
Lal15g0730 959 SMART AAA_5 60 210 IPR003593 -
Lal15g0730 959 Pfam Phosphoribulokinase / Uridine kinase family 526 691 IPR006083 GO:0005524|GO:0016301
Lal15g0730 959 Pfam Phosphoribulokinase / Uridine kinase family 64 222 IPR006083 GO:0005524|GO:0016301
Lal15g0730 959 Gene3D - 708 871 - -
Lal15g0730 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 485 610 - -
Lal15g0730 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 611 950 - -
Lal15g0730 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 420 - -
Lal15g0730 959 Gene3D - 62 241 IPR027417 -
Lal15g0730 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 224 IPR027417 -
Lal15g0730 959 Gene3D - 523 700 IPR027417 -
Lal15g0730 959 CDD UMPK_like 63 225 - -
Lal15g0730 959 PANTHER URIDINE KINASE 485 610 - -
Lal15g0730 959 PANTHER URIDINE KINASE 611 950 - -
Lal15g0730 959 PANTHER URIDINE KINASE 2 420 - -
Lal15g0730 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 694 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0730 Lal-Chr15 5117291 5135073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0730 519 682 PRT Gene Family AT1G55810 25.281 1.35e-08 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0730 15 5117291 5135073 Lal15g0730 15 5117291 5135073 ECH
Lal15g0730 15 5117291 5135073 Lal23g0869 23 11003167 11019120 LSH
Lal15g0730 15 5117291 5135073 Lal7g1328 7 18523828 18531756 PCT
Lal16g0477 16 2979243 2983601 Lal15g0730 15 5117291 5135073 PCT
Lal15g0417 15 2831801 2836234 Lal15g0730 15 5117291 5135073 PCT
Lal15g0730 15 5117291 5135073 Lal16g0477 16 2979243 2983601 PCT
Lal15g0730 15 5117291 5135073 Lal15g0417 15 2831801 2836234 PCT