Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0720 ATGGCCGGCAAACTCGCCGCCGGGAATCACTCGCCGGATGACATCCTTTCCCTCATTCACGACATCACCGGAATATGCTCCGCCGACTCACCCTCCGCCGCTGCAACCATGTTCAGGAAAGACTGCACCGATCTAGTTCGCCGGATCTCTCTCCTCACCTACTTGTTCGAGGAGGTTAAGGAATTGAACAAGGTTGCCGAATCTGCTTCCACTTCTTCTTCTACTACTACTGCTACTGGTGACTGTGATTCTTGGTCCTCTGATCTGGTTCTTGCTCTTCACTCTGCGAAACGCTTGCTTTCGATAGCTAGAAACTTTCGTTCCGATTGCTCTTCTGATGGAGCTGCAAGAACCACTGTTTTCCAATTTCAGTGCGTGACATGGAAATTGGAAAAATTATTAAGCAACTTACCCTATGACAATTTAGACATCTCAGAAGAAGTCAGAGAACAGTCTTTGGCTCAAGAGATAAGCCAAGTTCATGGCAAATCTGTGAATGGATTGCATAAACAACTCAGCGATCCTGAAAAGTTAACAGAACTCAACAGTATTCCTAAAAACAATGGTGGGAAAGGTTGCAGCACATTTAGGGCATTTTCTCTCTTGGAAAGATCAAGGAGCATTCCCGCCTCTACTGATGTTTCCTCATCAAATGTAAATGACCCTGAAAGTCAAGAAAATTCAGAGGGTAGGAGTTTATTCGGAGGTAAAAAACCAGAAGCCATTGTGATCCCTGAAGATTTTCTTTGCCCAATATCTCTGGAACTAATGAGAGATCCTGTTATTGTGGCAACCGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATATAACGTGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACCCCAAATTATGTGTTAAGGAGCCTTATTACCCAGTGGTGTATAGATCACAACATTGAGCAGCCAACAGGACTAACTAATGGCAAAATAAAAAAGAGTGATGGATCATTCAGAGATGTTACAGGTGACATAGAAGCAATTGAAGCTTTGGTCCGGAAGCTCTCCAGCCGGTCCATTGAGGAGCGTAGAGCAGCTGTTGCTGTAATTCGATCACTATCCAAACGAAGCACAGACAAAAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAATCTCTTAACATCAGAAGATGTATTGATGCAAGACAATGCAGTTACTTCCATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCGAGAGAAAACGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATGATAATTGGTGCCTCAGGAGCTATTCCCGCTTTGGTAGAATTGCTCCGAAATGGCAGCCCTAGAGGGAAAAAGGATGCAGCAACATCATTGTTCAATTTATGCATTTATCAAGGGAACAAGAGCAGGGCCATTAGAGCAGGGATTATCACAGCATTGTTGGAGATGATTACAGATTCAAGCAAATCAATGGTTGACGAATCCCTAACAATAATGTCAGTTCTTGCAAGCCACCAACAGGCAAAGGTTGCTATAGTAAAAGCCAGCACAATACCAGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGCAACAAAGAGAATGCAGCGGCCATTTTACTTGCCTTGTGCAAGAGGGATACTGACAATCTTGCCTGTATATGTAGACTTGGTGCTGTCGTACCACTTTCTGACCTTTCTCGGAGTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTATTGGAGCATCTTGGTAAGTTACAGCAGATATGA 1872 0.4375 MAGKLAAGNHSPDDILSLIHDITGICSADSPSAAATMFRKDCTDLVRRISLLTYLFEEVKELNKVAESASTSSSTTTATGDCDSWSSDLVLALHSAKRLLSIARNFRSDCSSDGAARTTVFQFQCVTWKLEKLLSNLPYDNLDISEEVREQSLAQEISQVHGKSVNGLHKQLSDPEKLTELNSIPKNNGGKGCSTFRAFSLLERSRSIPASTDVSSSNVNDPESQENSEGRSLFGGKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNITCPKTQQKLQHLTLTPNYVLRSLITQWCIDHNIEQPTGLTNGKIKKSDGSFRDVTGDIEAIEALVRKLSSRSIEERRAAVAVIRSLSKRSTDKRILIAEAGAIPVLVNLLTSEDVLMQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKMIIGASGAIPALVELLRNGSPRGKKDAATSLFNLCIYQGNKSRAIRAGIITALLEMITDSSKSMVDESLTIMSVLASHQQAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLACICRLGAVVPLSDLSRSGTERAKRKATSLLEHLGKLQQI 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0720 623 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Lal15g0720 623 Pfam Armadillo/beta-catenin-like repeat 375 412 IPR000225 GO:0005515
Lal15g0720 623 ProSiteProfiles U-box domain profile. 243 317 IPR003613 GO:0004842|GO:0016567
Lal15g0720 623 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 18 620 - -
Lal15g0720 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Lal15g0720 623 MobiDBLite consensus disorder prediction 211 235 - -
Lal15g0720 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Lal15g0720 623 Gene3D - 326 419 IPR011989 -
Lal15g0720 623 SUPERFAMILY RING/U-box 241 318 - -
Lal15g0720 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Lal15g0720 623 Gene3D - 420 522 IPR011989 -
Lal15g0720 623 PANTHER U BOX DOMAIN-CONTAINING 18 620 - -
Lal15g0720 623 Gene3D - 523 622 IPR011989 -
Lal15g0720 623 SMART Ubox_2 247 310 IPR003613 GO:0004842|GO:0016567
Lal15g0720 623 CDD RING-Ubox_PUB 248 290 IPR045210 -
Lal15g0720 623 SUPERFAMILY ARM repeat 341 617 IPR016024 -
Lal15g0720 623 Pfam U-box domain 244 314 IPR003613 GO:0004842|GO:0016567
Lal15g0720 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 317 IPR013083 -
Lal15g0720 623 MobiDBLite consensus disorder prediction 211 231 - -
Lal15g0720 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 342 384 IPR000225 GO:0005515
Lal15g0720 623 SMART arm_5 455 495 IPR000225 GO:0005515
Lal15g0720 623 SMART arm_5 537 577 IPR000225 GO:0005515
Lal15g0720 623 SMART arm_5 414 454 IPR000225 GO:0005515
Lal15g0720 623 SMART arm_5 373 413 IPR000225 GO:0005515
Lal15g0720 623 SMART arm_5 579 619 IPR000225 GO:0005515
Lal15g0720 623 SMART arm_5 496 536 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0720 Lal-Chr15 5022333 5027064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0720 5 622 U-box Gene Family AT1G23030 59.213 0.0 688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0720 15 5022333 5027064 Lal15g0720 15 5022333 5027064 ECH
Lal16g0751 16 4853965 4855203 Lal15g0720 15 5022333 5027064 LSH
Lal15g0720 15 5022333 5027064 Lal23g1294 23 13946114 13950044 LSH
Lal16g0754 16 4870294 4873804 Lal15g0720 15 5022333 5027064 LSH