Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0633 ATGATAAGTAACTGCGGCAAAATGGGACACATCCCTCCAGCAACACTAACGAATGGGCACAGGTTCTTTTCTCTCTCTCTATCTCTCTCAATTATTAGACAAAAACGTGCCCACCCCAATTTTGTTGTTTTCCTCTTGGAAGAGAATATCTACACTATTTTGCTAATTCAACTCTTTCCTTTTCTTCTTCTTTCTCAGACTCATAACATAGATGGTAATCACAAGGATTCGATGGCTTCTTCCAGTACTGATATTAGGGCTATGGAAAAACCAGGTCAAGAGCTCCTTAAGCAGCAACAACAAGCACAGAAATGTCCTCGTTGTGACTCATCAAACACCAAGTTCTGTTACTACAACAACTACAGCATCTCACAGCCACGCTACTTCTGCAAAGCCTGCAAGCGTTACTGGACAAGAGGTGGAACGCTCAGAAACGTTCCTGTTGGAGGTGGCTGCAGAAAAAACAAACGTGTCAAGCGTCCAAATATGGATACTATTTCTCCTTCTTCCAATTCCAACTCAAATCCTCCTAATAATAATGTTGTTAGTTCAACAGCCTCAAATCATATCCACCCTTTGTTTTATGGGTTACCACCCAGTAATAACTCTTGTGATGTCAAGAGTACTCTTCAATTCCCGAGGTTTAGTTCTGGGTATGAGCCTCAGCCTCAGTTGAATTACCTTGGATTAGGTTTTTCACCTGAGGTTATGTCTACTGACAATGGTCACAGAAATGGGTTTATTTCAAGTAACAACAACACTCTTCTTTCTACTTATAGTTGCATCTTTGGTTCTTCAATTTCTACACCCCCTACTCCGGTTATGGCTTCCCCACTACTGCAACAGAAATTTATGAATGGTAGGGTGAAAGATGTTCCTGCAGAAATTTATGAATGGTAG 900 0.41 MISNCGKMGHIPPATLTNGHRFFSLSLSLSIIRQKRAHPNFVVFLLEENIYTILLIQLFPFLLLSQTHNIDGNHKDSMASSSTDIRAMEKPGQELLKQQQQAQKCPRCDSSNTKFCYYNNYSISQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNMDTISPSSNSNSNPPNNNVVSSTASNHIHPLFYGLPPSNNSCDVKSTLQFPRFSSGYEPQPQLNYLGLGFSPEVMSTDNGHRNGFISSNNNTLLSTYSCIFGSSISTPPTPVMASPLLQQKFMNGRVKDVPAEIYEW 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0633 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 73 292 - -
Lal15g0633 299 MobiDBLite consensus disorder prediction 162 183 - -
Lal15g0633 299 MobiDBLite consensus disorder prediction 148 183 - -
Lal15g0633 299 Pfam Dof domain, zinc finger 101 157 IPR003851 GO:0003677|GO:0006355
Lal15g0633 299 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Lal15g0633 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 292 IPR045174 GO:0003700|GO:0006355
Lal15g0633 299 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0633 Lal-Chr15 4360815 4361714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0633 104 264 C2C2-Dof Transcription Factor Family AT1G28310 49.162 5.68e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal15g0633 zf-Dof 5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0633 - - dzi:111318734 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0633 15 4360815 4361714 Lal15g0633 15 4360815 4361714 ECH
Lal15g0633 15 4360815 4361714 Lal23g0939 23 11500999 11503102 LSH
Lal15g0633 15 4360815 4361714 Lal11g0197 11 1396375 1397686 PCT
Lal11g0197 11 1396375 1397686 Lal15g0633 15 4360815 4361714 PCT