Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0428 ATGATGATGTCACAAGATGAAACACTTCCAAAACAAGCAGCAACAACTAAAGACCATGCTATTAATAACCAACAAGGTTCTAATTCTGGTAGCAGTAAAAGTGGCACCAAAACAACAAGGCCACAAGAACAAAGCTTCAAGTGTCCACGATGTGACTCACCAAACACCAAGTTCTGCTACTACAACAATTACAGTCTCACACAGCCAAGGCACTTCTGCAAAACATGTAGAAGATACTGGACAAAAGGTGGCTCTTTGCGTAACGTCCCTATAGGTGGTGGTTGCAGAAAAAACAAGAAGGTTAAGTCTTCAAGGCTTTCATGTGATTCAAAAGACTCTGATGGTGGTACTTCTTTAGAACATCATCACCTTGGTGGTGGCCTTAAGTTCCTTCATTCTCTTTCATCACCTCCTGTTCATGATTTTCAAGTTGGTGGTTTAGCTTTACCATTCCTTCATCACCCTCCAATTCCAACCACTACTACTTCCATTTATAACAACCAGTTCTCTTCTTTTGGAGATGTTTCAAATGCTCCAAGTTTCAACCTTGACCCTTCTTCTGGTTCCACCACCCCAAGTTCTTCTAATTTGCTTGGTCTGTATTACCCATTTAATGGTGCAAATGCTGCAATACAGTGTGATATGAGTCCAATGAACCTTAATGCTAATCTTGCTTCTTCTATTGAGTCCTTGAGTTTTATAAACCAGGACTTGCACTGGAAGGTTCAGCAGCAGAGGTTAGGTATGCTGTTTGGTGGAGAAAACCAGAAAGAGGGTAACCTTGAGATTAACCAGACCCAGAGGCCTCAACCCATTTTGTTTCAGAACCTTGAGATTTCAAAGCCAGTGACTTTCCCTATTGAGATCAGTTCAAGAAAAGAAGGTCCTAGTGGTGGAGGGGATATACCAACTGAGTGGTTCTTCGGGAATTCTTCTGCCTCAGTCACAACTCACAACAACACTTACATCAACAACTAG 978 0.4172 MMMSQDETLPKQAATTKDHAINNQQGSNSGSSKSGTKTTRPQEQSFKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGSLRNVPIGGGCRKNKKVKSSRLSCDSKDSDGGTSLEHHHLGGGLKFLHSLSSPPVHDFQVGGLALPFLHHPPIPTTTTSIYNNQFSSFGDVSNAPSFNLDPSSGSTTPSSSNLLGLYYPFNGANAAIQCDMSPMNLNANLASSIESLSFINQDLHWKVQQQRLGMLFGGENQKEGNLEINQTQRPQPILFQNLEISKPVTFPIEISSRKEGPSGGGDIPTEWFFGNSSASVTTHNNTYINN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0428 325 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 25 315 - -
Lal15g0428 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 315 IPR045174 GO:0003700|GO:0006355
Lal15g0428 325 MobiDBLite consensus disorder prediction 1 47 - -
Lal15g0428 325 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Lal15g0428 325 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Lal15g0428 325 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0428 Lal-Chr15 2930078 2931055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0428 3 312 C2C2-Dof Transcription Factor Family AT5G65590 41.379 8.96e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal15g0428 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0428 - - gmx:100777894 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0483 16 3032394 3034451 Lal15g0428 15 2930078 2931055 LSH
Lal15g0428 15 2930078 2931055 Lal23g1089 23 12544956 12546056 LSH