Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0417 ATGTCTCCGCCACTGCTGGTTACGGAGGAGGAAGGGCATAGCAAAGTCTTGTCGACGGTATTATCTGCATCTTCACAATCCTTAGACTGTTTCTCCCAAAATGGGGTTGAATTGAAGGAAAGAAATTACATGGGATTGTCTGATTGTTCATCAGTGGACAGTTCTAGTCCTACTGTCCCAAGCTTCTCTGATGAGAAAAAGGGGATCCTGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCTGGATCGCAATCGCCTGAAAGGAACCCAGATCTTTACTCTTCAAGCTCGGCAAAACTTGATGAAAAGCCACTGTTCCCTTTGCTTCCTATGAAAGATGGGATCTGCTTGTCTTCCCAGAAGACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCCGATACCATGGATGGGTTCCCTCAGGGGAAGTTTACTGGCAATACTGGGATGGGCATAATGCTGTCACCTAGACCTTCTGGAGTTCAGCCCAGAACAGTGAAAGAAATTACAAACAAGGTGTTACAAGAACGGCCTTGTGCAGCTAATGGTGCTTCTATCAGTAGTACAGCTCCGGCTTCTAAGGCACAGGTCGTTGGGTGGCCTCCTATCAGATCATTTAGGAAAAATTCGATGGCAACCACTTCGAAGAACAACAATGAAGTTGATGGAAAGCCAGGGCCTGCCGCTCTCTTTGTGAAGGTCAGCATGGATGGTGCCCCTTATCTTAGGAAGGTAGATCTAAGAAATTATACAACATATCCGGAACTATCTTGTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTTGGTCAGTGTGGCTCCCATGGAGCTCCAGGAAAAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTCTGTGTGGTTCAGAATATGTGGTCACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCGTGGGAGATGTTCATTGACACTTGCAGAAGGCTGAAAATCATGAAGGGTTCCGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1050 0.4648 MSPPLLVTEEEGHSKVLSTVLSASSQSLDCFSQNGVELKERNYMGLSDCSSVDSSSPTVPSFSDEKKGILNLKATELRLGLPGSQSPERNPDLYSSSSAKLDEKPLFPLLPMKDGICLSSQKTVVSGNKRGFADTMDGFPQGKFTGNTGMGIMLSPRPSGVQPRTVKEITNKVLQERPCAANGASISSTAPASKAQVVGWPPIRSFRKNSMATTSKNNNEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYPELSCALEKMFSCFTLGQCGSHGAPGKEMLSESKLRDLLCGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0417 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 342 IPR003311 GO:0005634|GO:0006355
Lal15g0417 349 Gene3D - 226 343 - -
Lal15g0417 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Lal15g0417 349 PANTHER AUXIN-INDUCED PROTEIN 14 342 - -
Lal15g0417 349 Pfam AUX/IAA family 75 340 IPR033389 -
Lal15g0417 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0417 Lal-Chr15 2831801 2836234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0417 243 329 B3 DNA Binding Superfamily AT1G19220 31.034 1.94e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lal15g0417 AUX_IAA 2.2e-88 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0477 16 2979243 2983601 Lal15g0417 15 2831801 2836234 LSH
Lal15g0417 15 2831801 2836234 Lal15g0730 15 5117291 5135073 PCT
Lal15g0730 15 5117291 5135073 Lal15g0417 15 2831801 2836234 PCT