Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0356 ATGGAGCACATAGATGGAGAGAAGGACATGGATAAGCAACAACCTCAAAATCAAAGATCAAACGACATGCAACAAGGTTATGGCCGACAATGGGTTCAACCTCAAAAGCCACAAGCAAGCCAACGGTGTCCTCGTTGTGACTCTTTGGACACTAGGTTTTGTTACTACAACAATTATAAGTCGACACAACCTCGTTACTTCTGCAGAAACTGTAAACGATATTGGACCCTAGGTGGGACATTAAGGAACATACCCATCGCTTGTAATATTTCTAAAGAGAAACGTACCAAAAATCCATCAACTTATCGGTTGCACCAGTCGACATTGCCACCATCACTACATGAGGTGGTTGTCCAAACACAACATCAACATCCACAAGAAGCGGCTCTCAAAACCCAACTCGCAAATATTAAAACAATGGAGAAGGCTAGGAACTCTTCACACATGATGGCTCCTCCCATGAGTCACTTTTATCAAGGTGGCCATGAGAATTTGTCTTCCATAGGGACAATCCATTCAATGAGACCATCACAACCACACACTTTAGACCAATCTTCAGGAGTTGGAGTTAGTGTTGATGGTTCTTCTTCCAATTCCCTTGCATATCAAGGTGGCAATGAGTATTTGCCTTCTATGGAACCAATTCATGCAATTAGACCATCACAACCACACACTTTTGACCACTCTCCAGGAATTGGAGTTGGTGTTGTTGGTTCTTCTTCCAAATTGGGCCATGCATGTGATTTCACTTCCAATTTTCTTACCTCTCAACATGCATTTCGACCAACACAATCCTATCAAATGGGTAACAAAGAAAATGATGTAATATCTTTGGATACGCCACAAGGTTTATTTGTCTCATCAAGCATTGCTAATAACAATATCAATGATGCTTCTCATAATGATTGCCCACAAAACTTCATCAATATTAGTACTCATGATGCTTTTTTCTCAAGTACCATCAACAATAGTACCACTTCCATTAGTGGTAACAATGAGAGGAACAATCCTTATACCCCAAATCAATGGTATGATTTTTCAGGGTACGACACTCTCCCATGA 1062 0.4068 MEHIDGEKDMDKQQPQNQRSNDMQQGYGRQWVQPQKPQASQRCPRCDSLDTRFCYYNNYKSTQPRYFCRNCKRYWTLGGTLRNIPIACNISKEKRTKNPSTYRLHQSTLPPSLHEVVVQTQHQHPQEAALKTQLANIKTMEKARNSSHMMAPPMSHFYQGGHENLSSIGTIHSMRPSQPHTLDQSSGVGVSVDGSSSNSLAYQGGNEYLPSMEPIHAIRPSQPHTFDHSPGIGVGVVGSSSKLGHACDFTSNFLTSQHAFRPTQSYQMGNKENDVISLDTPQGLFVSSSIANNNINDASHNDCPQNFINISTHDAFFSSTINNSTTSISGNNERNNPYTPNQWYDFSGYDTLP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0356 353 MobiDBLite consensus disorder prediction 177 196 - -
Lal15g0356 353 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 9 204 - -
Lal15g0356 353 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 197 350 - -
Lal15g0356 353 MobiDBLite consensus disorder prediction 16 43 - -
Lal15g0356 353 MobiDBLite consensus disorder prediction 1 15 - -
Lal15g0356 353 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Lal15g0356 353 MobiDBLite consensus disorder prediction 1 43 - -
Lal15g0356 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 204 IPR045174 GO:0003700|GO:0006355
Lal15g0356 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 197 350 IPR045174 GO:0003700|GO:0006355
Lal15g0356 353 MobiDBLite consensus disorder prediction 326 353 - -
Lal15g0356 353 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Lal15g0356 353 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0356 Lal-Chr15 2396362 2397423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0356 32 118 C2C2-Dof Transcription Factor Family AT5G60200 54.023 1.03e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal15g0356 zf-Dof 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0356 - - lang:109332569 535.028