Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0151 ATGCTGAGTTTCTGCATTGTAAACTCTACTCCAAATCATTCTCTTACTTGGGGATCCCGGTGGGGGTTAGTCATAAACGCAAATCTACTTGGACTAGCCTCATTAACAGAATTCAGTCCAGACTTTCCTCTTGGTACTCAACTAATATCTCTTTTGCAGGCCGGGTGGTTATTTCTAAAGACAAACCTGACTATTGGGAATGGAGGCACGGACATAATTCCTACAAAGGATGCTCTTATTAGGCTGGGCATTTCTATTCTCAATGACGGTGATCTTCAAGTAATAAAGAAGATGTTCCAAGAACTGTTGGGTGGTGCTAGTCTCATAGCAGGAGAAAGGAAAATCACCATTAATGGAGGAGGAGTTCTACTTCCACCCACAGTACCACCTTCCACTTCTCACTCTTCTTCACAACCTCCTTCCAATTCCACAACAACCGTTACCACCACCACTGTTGCCGCAGAAAACCAAAATTTGAGGTGTCCACGATGTGATTCACCAAACACCAAGTTCTGTTATTACAACAACTATAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGTTACTGGACCAAAGGAGGTGCTCTCAGGAATGTACCAATCGGAGGTGGCTGCCGTAAAAGCAAGAACGTGGCCGTGTCAAACTCGGCCGCGAAGGCAGCCACCACAAAGATGAAGGCAGTGGCATCAGAGCTTGGAAGGTCATGTCTTGGTCCTGCAGGGTTTGTTAATGAGCTACCAACAAGTCCAATCTTATGGGGTTCTCCACAAAATACTCATCTTTTGGCTTTACTCAAACCTAGTACGCAAAACCAAAACTCTAACCCTAACCCTAGTTCCATGTCTTTCAATGATGTTGGTGTGAAAGAAGGGAACTTAATGGGATCTCAGTCCCACTTGATGACTGAACCATTGATCACAAATGTGAATCCTCGGCCCCTAGGGTATGGTAGTGTTGGACAAATCCCTTCATTGGGTTTTGGCAGCACACTTTGGAGAAGCAATAATCAAAATCAACCTCAACAAAATCATAGCAGCTTTGTACTTGGCGAACATCAAAACATGAGTGGAATTCAAGAACTTTACCACAAGCTCAGGTCACCATCATCAGGTAATTACTGCAGTGATAGTAACTCAGCCATGTTTTTAGGCAACATGGCTTCTTCCTCATCTTTACCCAACATTCTGGAGTCCCCTTCAATTGCTGGGGCTGAATTGGGGAGCTGGAATCCAAACCTTTCTTGGTCTGATCTTCCAACAACCAATGGTGCATATCCTTAA 1290 0.4465 MLSFCIVNSTPNHSLTWGSRWGLVINANLLGLASLTEFSPDFPLGTQLISLLQAGWLFLKTNLTIGNGGTDIIPTKDALIRLGISILNDGDLQVIKKMFQELLGGASLIAGERKITINGGGVLLPPTVPPSTSHSSSQPPSNSTTTVTTTTVAAENQNLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKNVAVSNSAAKAATTKMKAVASELGRSCLGPAGFVNELPTSPILWGSPQNTHLLALLKPSTQNQNSNPNPSSMSFNDVGVKEGNLMGSQSHLMTEPLITNVNPRPLGYGSVGQIPSLGFGSTLWRSNNQNQPQQNHSSFVLGEHQNMSGIQELYHKLRSPSSGNYCSDSNSAMFLGNMASSSSLPNILESPSIAGAELGSWNPNLSWSDLPTTNGAYP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0151 429 Pfam Dof domain, zinc finger 157 213 IPR003851 GO:0003677|GO:0006355
Lal15g0151 429 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 127 427 IPR045174 GO:0003700|GO:0006355
Lal15g0151 429 ProSiteProfiles Zinc finger Dof-type profile. 159 213 IPR003851 GO:0003677|GO:0006355
Lal15g0151 429 PANTHER F-BOX FAMILY PROTEIN 127 427 - -
Lal15g0151 429 MobiDBLite consensus disorder prediction 126 146 - -
Lal15g0151 429 MobiDBLite consensus disorder prediction 128 146 - -
Lal15g0151 429 ProSitePatterns Zinc finger Dof-type signature. 161 197 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0151 Lal-Chr15 1055207 1062236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0151 149 220 C2C2-Dof Transcription Factor Family AT5G65590 73.611 4.64e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal15g0151 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0151 - - gmx:100800420 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0151 15 1055207 1062236 Lal23g1353 23 14311167 14312852 LSH