Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1877 ATGCATGAAATACAGTCGATGCGAGGAGGCAGTTTCTTCGGCGGAGGAGACCGGAAGTTGAGACCACAACACCACCATCAGCCCTTGAAGTGTCCCCGCTGCGACTCTCTTAACACCAAGTTCTGCTACTACAACAACTACCATCTCTCCCAGCCACGTCACTTCTGCAAGACCTGCCGTCGTTATTGGACTAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGTGGTTGCCGCAAATCCAAACGTTCCCACAAAAATTCCTCTTCTGAAACTCAAACCATCACTGCGCCAACAGAGCACAACTCCAATTCTCATTCCAGCAGTGAAAGTTCCAGCCTCACACTTACCACCGAAGCGGTTTCAGCACCAAAAACTTTCAACTCTGATTCCAATAATAACAACGAGTCCAACTTGTTTATCCCTTTCTCAAACCCTACTTTGGAGACAGGTGCACTTGAAAAACAACAAGGAGCTGGGGATTGTGCTATTTTCTCTGAGATTGGAAGCTTCAGAAGCTCGACCACTTCCACCAACGATACATTGCAGTTTGGATTCGGTGGTAAAACTACAACTATCCCTGATGCGTCGTCGTTTCGATGGCAGCACCAAAAGGGGTTAATGATGACCATGGGTGGTGGTAATGATGGGGAATTGGAGTTTCCGGATAATCTCTCCGGTGGTTGTGCTTCGTTGCTAGAACAGGGTACCATACCCGTTGATTTAACTGGGCTTCAAAACAAAACAGGCCACGTAGGATTTGGATCGTTGGATTGGAATGGTGGTGTAGATCAAGGTATGTTTGATCTTTCTAACACCGTTGATCATACTTACTGGACTCATCACACTACTCACTGGTATGATCACCACAATTCTTCTCTCTTTCAGCTTCCCTGA 897 0.4771 MHEIQSMRGGSFFGGGDRKLRPQHHHQPLKCPRCDSLNTKFCYYNNYHLSQPRHFCKTCRRYWTKGGVLRNVPVGGGCRKSKRSHKNSSSETQTITAPTEHNSNSHSSSESSSLTLTTEAVSAPKTFNSDSNNNNESNLFIPFSNPTLETGALEKQQGAGDCAIFSEIGSFRSSTTSTNDTLQFGFGGKTTTIPDASSFRWQHQKGLMMTMGGGNDGELEFPDNLSGGCASLLEQGTIPVDLTGLQNKTGHVGFGSLDWNGGVDQGMFDLSNTVDHTYWTHHTTHWYDHHNSSLFQLP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1877 298 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Lal14g1877 298 PANTHER DOF ZINC FINGER PROTEIN 4 14 206 - -
Lal14g1877 298 MobiDBLite consensus disorder prediction 74 118 - -
Lal14g1877 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 206 IPR045174 GO:0003700|GO:0006355
Lal14g1877 298 MobiDBLite consensus disorder prediction 88 118 - -
Lal14g1877 298 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Lal14g1877 298 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Lal14g1877 298 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1877 Lal-Chr14 18240598 18241494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1877 17 298 C2C2-Dof Transcription Factor Family AT5G60850 38.079 7.13e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal14g1877 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1877 - - gmx:778097 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1877 14 18240598 18241494 Lal14g1877 14 18240598 18241494 ECH
Lal14g1877 14 18240598 18241494 Lal7g1335 7 18571094 18571987 LSH
Lal14g1877 14 18240598 18241494 Lal19g1434 19 17002931 17003827 LSH