Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1809 ATGTCTGAAGCAAAAGACCCAGCGATAAAACTCTTCGGGAAAACAATTCCAGTACCGGATATTTCAACCGGATCCGGTGACTCATTAGAAGCTAAAGTTTCATCTTTTGGTGAAGTTCATAAGAATCATGCTTCTTCTATCTATTGTTCAAATGGAGAAGATGAAGAAGAAGAGAATGAGATTGAACAGGACACGATGGGAGAAAAACCAACCGAGGATAGGAAGGAAGATGTTACCCAATCATCAGAAGAGATCACCAATGTAGATACAGGCTCAAGATCAGATGAAGCATCTATATCCCCCTCCACTGATAAGGATGCTACTACATGGGAAACTTCAAGGACTGAAGAAGAACGTGGTGAGAACTCACAAGAAAAGACGCTGAAAAAACCAGACCAAATACTGCCTTGCCCCCGTTGTAATAGCACGGACACCAAGTTCTGCTATTTCAACAATTACAATGCCAACCAACCGCGCCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCCGGTGGGTCCATGAGGAATGTACCTGTTGGTGCTGGTCGCCGGAGGAACAAGAACTCCACCACTCTCTTTCGTCAGATAACTGTCCCTGAAGCAGCACTCCAGAATCCTCAGTCAAATGGTGTCCATCATCCTTCCTTGAAATGTAATGGCACAGTCCTGTCATTTGGATCTGATACACGCTTGTGTGAATCTATGCAATCGGTTTTGGAACTTGCTGATAAAACAGTGAACGATTGCGTGAGAAATGGATTCAATGGACCAGAAGAACCGAGAATCTCTGTTCCGTATGTCAGTGAAGAAAAAGGGAGCAATAATTCTCATAAATCTTCTGCCACATCAGCAAAGCCAACGGAAGGTTCAACCATTGATAACGCCCAAGAACACGTTCTTCAGAACTTTCTGGGTTTCCCACCTCATGTTCCCTACTTTTCTGGTGCCCCTTGGCCTTTCCCATGGAACCCGGCTCAGTGGAACTCTCCTGTACCACCACCTAACTTTTTCCCACCGGGATTTACGATTCCATTTTATCCTGCAGCTGCTTATTGGGGTTTTACGGTGCCGCCGGGTGCATGGAACATGAACATCCCATGGCTAGCACAACCTTCATCCCCAAATAGTACGGCTAGAGCGACTAGCTCTGGTCCCAACTCCCCAACCTTGGGTAAACATTCGAGGGAAGAAAACACGGTCAAATCAAATGACGCGGCAGATGGAGATGAACATTGTCAAGGAAATAATAAAGAAAAAAACCTTTGGGTTCCGAAAACATTGAGGATTGATGACCTAGGAGAAGCAGAAAAATGCTCTATGTGGACAACTCTTGGGATTGAAATTAATAAGGTGGACTCATTTCCAGGGGGAGGACTCTTTAAAGCATTCACATCAAAGCGTGATGAGAAAAACCATGTAATTCAAACTTCACCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTCGGTCGATCAACTTTCACGAGTCCTCATAG 1497 0.4496 MSEAKDPAIKLFGKTIPVPDISTGSGDSLEAKVSSFGEVHKNHASSIYCSNGEDEEEENEIEQDTMGEKPTEDRKEDVTQSSEEITNVDTGSRSDEASISPSTDKDATTWETSRTEEERGENSQEKTLKKPDQILPCPRCNSTDTKFCYFNNYNANQPRHFCKNCQRYWTAGGSMRNVPVGAGRRRNKNSTTLFRQITVPEAALQNPQSNGVHHPSLKCNGTVLSFGSDTRLCESMQSVLELADKTVNDCVRNGFNGPEEPRISVPYVSEEKGSNNSHKSSATSAKPTEGSTIDNAQEHVLQNFLGFPPHVPYFSGAPWPFPWNPAQWNSPVPPPNFFPPGFTIPFYPAAAYWGFTVPPGAWNMNIPWLAQPSSPNSTARATSSGPNSPTLGKHSREENTVKSNDAADGDEHCQGNNKEKNLWVPKTLRIDDLGEAEKCSMWTTLGIEINKVDSFPGGGLFKAFTSKRDEKNHVIQTSPVLQANPAALSRSINFHESS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1809 498 MobiDBLite consensus disorder prediction 109 128 - -
Lal13g1809 498 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 497 - -
Lal13g1809 498 MobiDBLite consensus disorder prediction 269 290 - -
Lal13g1809 498 MobiDBLite consensus disorder prediction 372 394 - -
Lal13g1809 498 MobiDBLite consensus disorder prediction 83 108 - -
Lal13g1809 498 MobiDBLite consensus disorder prediction 1 134 - -
Lal13g1809 498 MobiDBLite consensus disorder prediction 395 417 - -
Lal13g1809 498 PANTHER CYCLIC DOF FACTOR 2 1 497 IPR045174 GO:0003700|GO:0006355
Lal13g1809 498 Pfam Dof domain, zinc finger 132 189 IPR003851 GO:0003677|GO:0006355
Lal13g1809 498 MobiDBLite consensus disorder prediction 261 290 - -
Lal13g1809 498 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Lal13g1809 498 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Lal13g1809 498 MobiDBLite consensus disorder prediction 64 82 - -
Lal13g1809 498 MobiDBLite consensus disorder prediction 372 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1809 Lal-Chr13 17584731 17588165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1809 6 498 C2C2-Dof Transcription Factor Family AT5G39660 40.727 4.90e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal13g1809 zf-Dof 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1809 - - aprc:113862693 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1809 13 17584731 17588165 Lal7g1385 7 18889309 18891934 ECH
Lal13g1809 13 17584731 17588165 Lal17g1035 17 8707313 8710972 ECH
Lal13g1809 13 17584731 17588165 Lal13g1809 13 17584731 17588165 ECH
Lal12g1437 12 17569325 17573124 Lal13g1809 13 17584731 17588165 ECH
Lal22g0743 22 5329464 5335579 Lal13g1809 13 17584731 17588165 ECH