Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1736 ATGGAAATGCCAAAAGGAGATGCTGTTATTTGTTTTGTGTCATTGTTCTGGTTTTGGAGCTTTGCAAATGCTTTGCTTTCTCCTAAAGGAGTGAACTATGAAGTGCAAGCTTTAATGGGTATAAAATCTTCTCTAGTGGATCCTCATGGTATTTTAGATGATTGGGATGGTGATGCAGTTGATCCATGTAACTGGAATATGGTGTATTGTTCACCTGAGAACCTTGTCATTAGCCTGGGCACTCCAAGTCAAAGTTTGTCTGGTACTCTTTCCCCAAGCATAGGAAACTTAACTAATCTTCAGAGTGTGCTGTTACAGAATAACAACATAACAGGACCAATTCCTTCAGAGCTAGGAAAACTTACCATGCTTCATACTCTTGATCTCTCTAATAACTTCTTCAATGGGATAATTCCTCCCTCTTTGGGTCACTTGAGAAGCCTCCAATACCTGAGACTTAATAATAACAGTTTTGATGGGGAATGCCCAGAGTCACTTGCTAATATGGCTGAGCTTGCTTTCCTTGACTTGTCCTACAACAATCTCAGTGGCTCTGTACCCAAAATTTTGGCCAAATCATTCAACATTGTCGGAAACCCCCTCATCTGCAGTACGGGAAAAGAAGCAAACTGCCATGGTTTGACATTGATGCCTATGTCCAGGAACTTAAACAACACTGAGAGTATTGCTATTGATTTTGACAGCAATGCCTTTGCTACTCTAGATGCTTTACCTTCAGGAAGACCAAAAGCACAGAAATTGTCCATTGCCCTTGGTTTAAGTCTGGGATGCCTCAGCTTGATAATTCTTGGCTTTGGACTTGTTCTGTGGTGGAGGAACAAGCATAATCGACAGACATTCTTTGATGTGAAAGACAGACATCATGAAGAAGTGTACCTAGGAAACTTGAAGAGGTTCCAATTAAGAGAACTCCAAATTGCTACAAACAACTTCAGCAACAAAAACATATTAGGAAAGGGTGGTTTTGGAATAGTGTACAAAGGAGTTCTCTCAGATGGCACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGAGATACAATTTCAGACTGAAGTTGAAATGATAAGCTTGGCAGTGCATAGAAACCTTCTCAGACTTTATGGATTTTGCATGACACCAACAGAAAGGCTTTTAGTCTATCCATATATGTCCAATGGCAGTGTTGCTTCTCGTCTTAAGGGTAAGCCGGTTTTGGATTGGAGCACAAGGAAGCAAATTGGGTTAGGAGCAGCAAGGGGACTAATATACCTACATGAGCAATGTGATCCAAAGATAATTCATAGGGATGTTAAAGCTGCTAATATATTGCTTGATGATTATTGTGAAGCAGTAGTTGGAGATTTTGGGTTGGCAAAACTTTTAGACCATAAAGATTCACATGTTACAACTGCAGTGAGAGGCACTGTGGGGCATATTGCACCTGAGTATCTTTCTACAGGTCAATCTTCTGAGAAGACTGATGTATTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCTTAGAGCTATTGAGTTTGGAAAGGTAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATTCACAAGGATAAGAAGCTTGAATTACTTGTAGACAAGGATCTAAAGAGCAACTATGACCTTATTGAGCTTGAAGAAATTGTTAAAGTGGCTCTCTTATGCACACAATATCTTCCAACCCATAGGCCCAAAATGTCTGAAGTTGTACCCATGCTTGAAGGTGATGGGCTTGCAGAAAAATGGGAAACTTACCCTCAAAGTTCTGACACTACAAATAAGCCCAAACCCAATGAGTTATCTTCATCAGATAGGTATTCTGATCTTACTGATGATTCTTCATTGTTAGTACAAGCCATGGAACTTTCAGGCCCAAGGTGA 1923 0.4046 MEMPKGDAVICFVSLFWFWSFANALLSPKGVNYEVQALMGIKSSLVDPHGILDDWDGDAVDPCNWNMVYCSPENLVISLGTPSQSLSGTLSPSIGNLTNLQSVLLQNNNITGPIPSELGKLTMLHTLDLSNNFFNGIIPPSLGHLRSLQYLRLNNNSFDGECPESLANMAELAFLDLSYNNLSGSVPKILAKSFNIVGNPLICSTGKEANCHGLTLMPMSRNLNNTESIAIDFDSNAFATLDALPSGRPKAQKLSIALGLSLGCLSLIILGFGLVLWWRNKHNRQTFFDVKDRHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGIVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWSTRKQIGLGAARGLIYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRAIEFGKVANQKGAMLDWVRKIHKDKKLELLVDKDLKSNYDLIELEEIVKVALLCTQYLPTHRPKMSEVVPMLEGDGLAEKWETYPQSSDTTNKPKPNELSSSDRYSDLTDDSSLLVQAMELSGPR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1736 640 SUPERFAMILY Protein kinase-like (PK-like) 295 588 IPR011009 -
Lal13g1736 640 SUPERFAMILY L domain-like 33 319 - -
Lal13g1736 640 ProSiteProfiles Protein kinase domain profile. 318 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1736 640 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lal13g1736 640 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Lal13g1736 640 MobiDBLite consensus disorder prediction 596 627 - -
Lal13g1736 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Lal13g1736 640 Gene3D Transferase(Phosphotransferase) domain 1 395 606 - -
Lal13g1736 640 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Lal13g1736 640 Gene3D Phosphorylase Kinase; domain 1 287 394 - -
Lal13g1736 640 MobiDBLite consensus disorder prediction 598 627 - -
Lal13g1736 640 Pfam Protein kinase domain 319 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1736 640 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 7 640 - -
Lal13g1736 640 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 640 - -
Lal13g1736 640 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Lal13g1736 640 SMART serkin_6 318 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1736 Lal-Chr13 16948051 16952879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1736 1 640 Receptor kinase-like Gene Family AT5G16000 73.416 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lal13g1736 Pkinase 1.5e-42 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1736 13 16948051 16952879 Lal13g1736 13 16948051 16952879 ECH
Lal13g1736 13 16948051 16952879 Lal6g0738 6 4918307 4922606 PCT
Lal6g0738 6 4918307 4922606 Lal13g1736 13 16948051 16952879 PCT