Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1628 ATGTCTGATAAGGATCCAGGTATAAGACTCTTTGGAATGAAGATTCTGGTGACTTCTCAAATGGGTTGTCAGATTTCTGCTAACTCTTCAATCATGAATGTGTGCCCATCGGAAACAGAAGTTGAAATACCTTGTGCTGGAAACTCTCAACAACGAGAGAACTCTACTGATTTCGAGGACAGCAAACAAGAGTCCGGACATAATAATGCTAAGGAAAGTGAATCAAAAGCAAATCCCAAGCCGGTGGAAGATGATCGGGAGACTAGTAGTACAGATCAAGATAAAACCTTCAAGAAGCCAGACAAGATTCTTCACTGTCCGCGATGCAACAGTTTGGAGACCAAGTTTTGTTATTTCAATAACTACAATGTCAATCAACCTCGCCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCCGGTGGAACAATGAGAAACGTTCCTGTGGGTGCTGGTAGACGGAAGAATAAGCACCTATCCACTCAATTCCGGCACATTATTGTAACATCTGATGGAATTCCGACCACCAGGTTTGAAACCAAAGATTCATCTAGTCATCAACTTGCCTCAACTCTTGAATCTGTAGAAAATGGTACGGTATTAAAATTTGGTCCAGATGCCCCTCTCAATGAATCCATGGAGTCGATGCTTAATCTTAGAGAGCATAAAAGAAGTGTTGATGGAACCTCTATCAATTGTCATGATAATCGGGAAGACGAGCCATCGTTGTGTGGATCTTCGGTGACGAAGACCTGTAATCCAGGAAATGAGTTATCAGAACATTATAAATCAAATTCTTTGCAGTGTTACCCTGTTCCTCCATGGGCGTTTCGGTCGAATCCAGGTTGGAACACCGTTGCTTCCATGGCAGCAGTTCACCAGCCTTCACTGCGCATGTGTAACCCTTCTGTTTCAATGCAGTGGTGTACCACACCAATGGTGGCAGTTCCGACCATGTGCCCACCAAGCATGCCCTTGCAATTTGTTCCGGCATCATACTGGAGTGGAACACCTGTATGGACCACTGCAGCTGGAACCGGTGCAATTGGATCGAATGATTGCCTCTCGCCTTCTTCCTCTACAAGTAACAACAGCTGCTGCTCGGGCAATGGTTCTCCGATATTGGGCAAACACACTAGAGATACTGTTTTAAGTGATGAAGAGAAATCAGATATGTATGTTTTCGTTCCAAAGACCCGTAGAATCGAAGAGACACACGATGTCTGA 1227 0.4425 MSDKDPGIRLFGMKILVTSQMGCQISANSSIMNVCPSETEVEIPCAGNSQQRENSTDFEDSKQESGHNNAKESESKANPKPVEDDRETSSTDQDKTFKKPDKILHCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLSTQFRHIIVTSDGIPTTRFETKDSSSHQLASTLESVENGTVLKFGPDAPLNESMESMLNLREHKRSVDGTSINCHDNREDEPSLCGSSVTKTCNPGNELSEHYKSNSLQCYPVPPWAFRSNPGWNTVASMAAVHQPSLRMCNPSVSMQWCTTPMVAVPTMCPPSMPLQFVPASYWSGTPVWTTAAGTGAIGSNDCLSPSSSTSNNSCCSGNGSPILGKHTRDTVLSDEEKSDMYVFVPKTRRIEETHDV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1628 408 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Lal13g1628 408 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 405 - -
Lal13g1628 408 PANTHER CYCLIC DOF FACTOR 2 1 405 IPR045174 GO:0003700|GO:0006355
Lal13g1628 408 MobiDBLite consensus disorder prediction 45 97 - -
Lal13g1628 408 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Lal13g1628 408 MobiDBLite consensus disorder prediction 55 97 - -
Lal13g1628 408 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1628 Lal-Chr13 16037428 16040557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1628 93 408 C2C2-Dof Transcription Factor Family AT5G39660 35.988 3.95e-46 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal13g1628 zf-Dof 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1628 - - ccaj:109792807 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1628 13 16037428 16040557 Lal13g1628 13 16037428 16040557 ECH