Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1417 ATGGTGAAGATTTGTTGCATTGGTGCCGGATATGTGGGAGGTCCTACAATGGCAGTGATTGCTCTAAAGTGTCCATCCATTGAAGTGGCTGTGGTTGATATTTCTAAATCCCGCATCGCAGCCTGGAACAGTGACCAACTTCCTATCTATGAGCCAGGCCTTGATGATGTAGTAAAGCAATGTCGCGGCAAGAACCTTTTCTTCAGCACCGATGTAGAAAAGCATGTCTTTGAGGCCGATATAGTTTTTGTCTCTGTCAACACCCCAACTAAGACTCAGGGTCTTGGTGCTGGAAAAGCAGCAGATCTGACATATTGGGAAAGCGCAGCTCGAATGATTGCCGATGTCTCGAAGTCTAACAAAATTGTGGTTGAGAAATCCACTGTCCCTGTCAAAACTGCTGAGGCAATAGAGAAAATTTTGACTCACAATAGCAAGGGTATCAAATTCCAGATTCTTTCAAACCCGGAATTCCTTGCTGAAGGAACTGCAATCAAGGATCTTTTTAACCCCGACCGGGTTCTCATTGGTGGCAGGGAAACGCCAGAAGGGGAAAAGGCTATTCAATCATTGAAAGATGTTTATGCTCAATGGGTTCCTGAGGAAAGAATTCTCACCACAAATCTATGGTCTGCAGAGTTGTCAAAGCTTGCTGCTAATGCCTTCTTGGCTCAGAGGATTTCATCCGTTAATGCCATGTCAGCGCTTTGTGAGGCTACTGGTGCAAATGTTTCACAGGTGTCCTTCGCTGTCGGCACAGACACAAGGATCGGACCGAAGTTCCTCAACGCTAGTGTTGGCTTTGGTGGATCCTGCTTCCAGAAAGATATATTGAACCTTGTTTACATCTGTGAATGCAATGGCCTTCCGGAGGTGGCTGAGTACTGGAAACAAGTTATCAAGATTAACGATTACCAGAAGAGTCGTTTCGTGAACCGTGTTGTTTCGTCTATGTTCAACACAGTTGCAACAAAAAAGATTGCCATTCTTGGATTTGCATTCAAGAAAGATACTGGTGATACAAGGGAGACTCCAGCAATTGATGTATGCAAGGGTTTACTTGGCGACAAAGCGTTTCTGAGCATATATGATCCGCAGGTAACTGAGGACCAAATCCAGAGGGACCTATGGATGAACAAGTTCGATTGGGACCACCCGATTCACTTGCAGCCTGCAAGTCCTACAACTGATAAGAAAGTCAGTGTGGTTTGGGATGCATATGAAGCAGCAAAGGATGCAGATGGTGTTTGCATTCTGACCGAGTGGGACGAGTTCAAGAATCTTGATTATCAGAGAATATATGACAACATGAGAAAACCAGCATTTGTTTTCGATGGAAGGAATGTTGTGAATGCAGATAAGCTGCGTGAAATTGGCTTCATTGTGTACTCAATTGGTAAGCCATTGGATGCATGGCTCAAAGACATGCCAGCAGTCGCTTAA 1443 0.447 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGEKAIQSLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVSFAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAFLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPASPTTDKKVSVVWDAYEAAKDADGVCILTEWDEFKNLDYQRIYDNMRKPAFVFDGRNVVNADKLREIGFIVYSIGKPLDAWLKDMPAVA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1417 480 Gene3D - 209 240 - -
Lal12g1417 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Lal12g1417 480 Gene3D - 1 208 - -
Lal12g1417 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Lal12g1417 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Lal12g1417 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 202 IPR036291 -
Lal12g1417 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Lal12g1417 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Lal12g1417 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 480 - -
Lal12g1417 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Lal12g1417 480 Gene3D - 241 478 - -
Lal12g1417 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Lal12g1417 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Lal12g1417 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Lal12g1417 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1417 Lal-Chr12 17338507 17339949 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1417 12 17338507 17339949 Lal12g1417 12 17338507 17339949 ECH
Lal6g0804 6 5394165 5395610 Lal12g1417 12 17338507 17339949 ECH
Lal22g0705 22 5087507 5088949 Lal12g1417 12 17338507 17339949 ECH
Lal18g0914 18 11902228 11903673 Lal12g1417 12 17338507 17339949 ECH
Lal16g0805 16 5213268 5224219 Lal12g1417 12 17338507 17339949 ECH
Lal15g0779 15 5600644 5603084 Lal12g1417 12 17338507 17339949 ECH
Lal12g1417 12 17338507 17339949 Lal24g1348 24 14767625 14770778 LSH
Lal12g1417 12 17338507 17339949 Lal6g0804 6 5394165 5395610 PCT
Lal6g0804 6 5394165 5395610 Lal12g1417 12 17338507 17339949 PCT