Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1301 ATGAGCAACAACAATTATAATACCATCTTCTCAAACCAAAATCCACATGGGAAAATAAGCACTTCTGACCCTATTGAGATGCAAGATCCTTCTCAACTTATACATCAAGGCAATGAAAAGAAAAGACATTATAGAGGTGTAAGACAAAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGACCCTAAAAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACAGCAGAAGCTGCAGCTTCTGCATATGATGCTGCTGCTTTGAAGTTCAAAGGAAACAAAGCTAAGCTTAATTTCCCTGAACTCATTCCTTCTAATTCACCACCACCACAACCACCACCGCCGCCGCCACCGGTTGCTACTCAATCTTCTTCACATGAAGGTTTTCCAAACCTAATGCAATATGCACAAGTTCTTTGTAGTAGAGATGATGATGATCTTCAACGTGCTGCTTCTGGCTTATATTATCATCAATATAATGAGTCATTTTCACCTTCAACATCATCATCAGCAATGGCATCATCAACTTCTAATAATGTTGTGTTTGATCAACATGAGTTTGTAGATTATGGTTCTTATTTTTTTAATGAACAAAGGAATACGAGGGAATAG 612 0.3873 MSNNNYNTIFSNQNPHGKISTSDPIEMQDPSQLIHQGNEKKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAASAYDAAALKFKGNKAKLNFPELIPSNSPPPQPPPPPPPVATQSSSHEGFPNLMQYAQVLCSRDDDDLQRAASGLYYHQYNESFSPSTSSSAMASSTSNNVVFDQHEFVDYGSYFFNEQRNTRE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1301 203 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Lal12g1301 203 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Lal12g1301 203 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Lal12g1301 203 PANTHER DNA-BINDING DOMAIN 16 108 IPR044808 GO:0003700|GO:0009873
Lal12g1301 203 PANTHER DNA-BINDING DOMAIN 114 176 IPR044808 GO:0003700|GO:0009873
Lal12g1301 203 MobiDBLite consensus disorder prediction 1 25 - -
Lal12g1301 203 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Lal12g1301 203 MobiDBLite consensus disorder prediction 103 121 - -
Lal12g1301 203 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Lal12g1301 203 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Lal12g1301 203 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Lal12g1301 203 MobiDBLite consensus disorder prediction 99 127 - -
Lal12g1301 203 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
Lal12g1301 203 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 16 108 - -
Lal12g1301 203 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 114 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1301 Lal-Chr12 15962022 15964578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1301 28 103 AP2-EREBP Transcription Factor Family AT5G61890 75.309 2.44e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal12g1301 AP2 1.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1301 12 15962022 15964578 Lal19g0997 19 13842021 13843395 ECH
Lal12g1301 12 15962022 15964578 Lal4g0680 4 5321613 5323687 ECH
Lal12g1301 12 15962022 15964578 Lal21g0694 21 5496544 5497748 ECH
Lal12g1301 12 15962022 15964578 Lal12g1301 12 15962022 15964578 ECH
Lal6g1644 6 19205330 19207783 Lal12g1301 12 15962022 15964578 ECH